Hi, On Wed, 2013-04-24 10:31 EDT, Jianghai Zhu <j...@idi.harvard.edu> wrote:
> Hi, > > I have a trajectory file, in which two short helices would merge into one > long helix. However, when I play the trajectory in Pymol as cartoon, the > long helix would still be shown as two helices with a loop in between. > Is there a way to force Pymol to show a long helix for a specific range > of frames in a trajectory? Thanks a lot. When you load the trajectory, use the discrete flag to have PyMOL computer the secondary structure for each state . load trajectory.pdb, discrete=1 I'm assuming you are loading a multi-model .PDB file as the trajectory. If you are using the load_traj command to load an AMBER trajectory, there is no similar option. Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Dept. of Biomedical & Molecular Sciences Botterell Hall Rm 644 Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ Try New Relic Now & We'll Send You this Cool Shirt New Relic is the only SaaS-based application performance monitoring service that delivers powerful full stack analytics. Optimize and monitor your browser, app, & servers with just a few lines of code. Try New Relic and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_apr _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
