I guess the question is, why two dock icons? I'm seeing something perhaps similar; I have a Python-Cocoa app that when started will cause one of those pop-up windows, "App quit unexpectedly, do you want to submit a bug report to Apple", and the crash report shows that a multi-threaded program crashed in thread 0 with SEGV attempting to access location 0. But the app seems to be running, just fine. When I poked at it a bit more, it looks like using "open" or double-click to launch the app somehow causes two instances to start (fork, somewhere?), and one of them is bad. This is with Xcode 3.1.3 and OS X 10.5, but no Qt, no Python-2.6.2.
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