example(heatmap.2) works for me, hence it is either your data, your version of some package or your version of R that causes the problems, we do not have information of any of these although the posting guide asks you to provide this for each posting. So we cannot help.

Uwe Ligges


On 29.11.2011 14:45, Stuart wrote:
Hi
I used to make heatmaps using following commands but now some thing
has changed as I get

library(gplots)
heatmap.
2(qtl.map,Rowv=F,dendrogram="column",col=colorRampPalette(c("blue","lightblue","black","black","yellow","red")),breaks=seq(-4.01,4.01,length.out=51),
density.info="none", )


following error and also the ouput eatmap is also blurred so I can not
see anything! I am just wondering something has changed in package or
its just something I am getting.

Warning messages:
1: In plot.window(...) : "at" is not a graphical parameter
2: In plot.xy(xy, type, ...) : "at" is not a graphical parameter
3: In title(...) : "at" is not a graphical parameter

Any help would be much appreciated!

Cheers

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