NAME
ID
a
b
c
d
1
Control_1
probe~B01R01C01
381
213
345
653
2
Control_2
probe~B01R01C02
574
629
563
783
3
Control_1
probe~B01R09C01
673
511
521
967
4
Control_3
probe~B01R09C02
53
809
999
50
5
MM0289~RFU:11810.15
probe~B29R13C06
681
34
115
587
6
MM0289~RFU:9238.41
probe~B29R13C05
784
443
20
784
7
MM16597~RFU:36765.38
probe~B44R15C20
719
251
790
445
8
MM16597~RFU:41258.94
probe~B44R15C19
677
363
268
686
NAME
ID
a
b
c
d
1
Control_1
probe~B01R01C01
381
213
345
653
2
Control_2
probe~B01R01C02
574
629
563
783
3
Control_1
probe~B01R09C01
673
511
521
967
4
Control_3
probe~B01R09C02
53
809
999
50
5
MM0289~RFU:11810.15
probe~B29R13C06
681
34
115
587
6
MM0289~RFU:9238.41
probe~B29R13C05
784
443
20
784
7
MM16597~RFU:36765.38
probe~B44R15C20
719
251
790
445
8
MM16597~RFU:41258.94
probe~B44R15C19
677
363
268
686
Sorry, that should look like this:
NAME
ID
a
b
c
d
1
Control_1
probe~B01R01C01
381
213
345
653
2
Control_2
probe~B01R01C02
574
629
563
783
3
Control_1
probe~B01R09C01
673
511
521
967
4
Control_3
probe~B01R09C02
53
809
999
50
5
MM0289~RFU:11810.15
probe~B29R13C06
681
34
115
587
6
MM0289~RFU:9238.41
probe~B29R13C05
784
443
20
784
7
MM16597~RFU:36765.38
probe~B44R15C20
719
251
790
445
8
MM16597~RFU:41258.94
probe~B44R15C19
677
363
268
686 NAME ID a b c d
1 Control_1 probe~B01R01C01 3 22 926 774
2 Control_2 probe~B01R01C02 712 13 32 179
3 Control_1 probe~B01R09C01 937 824 898 668
4 Control_3 probe~B01R09C02 464 836 508 53
5 MM0289~RFU:11810.15 probe~B29R13C06 99 544 607 984
6 MM0289~RFU:9238.41 probe~B29R13C05 605 603 862 575
7 MM16597~RFU:36765.38 probe~B44R15C20 700 923 219 582
8 MM16597~RFU:41258.94 probe~B44R15C19 132 777 497 995
--- On Thu, 1/12/11, Jabez Wilson <jabez...@yahoo.co.uk> wrote:
From: Jabez Wilson <jabez...@yahoo.co.uk>
Subject: calculate mean of multiple rows in a data frame
To: "R-Help" <r-h...@stat.math.ethz.ch>
Date: Thursday, 1 December, 2011, 20:45
Dear all, I have a data frame (DF) in the following format:
NAME
ID
a
b
c
d
1
Control_1
probe~B01R01C01
381
213
345
653
2
Control_2
probe~B01R01C02
574
629
563
783
3
Control_1
probe~B01R09C01
673
511
521
967
4
Control_3
probe~B01R09C02
53
809
999
50
5
MM0289~RFU:11810.15
probe~B29R13C06
681
34
115
587
6
MM0289~RFU:9238.41
probe~B29R13C05
784
443
20
784
7
MM16597~RFU:36765.38
probe~B44R15C20
719
251
790
445
8
MM16597~RFU:41258.94
probe~B44R15C19
677
363
268
686.....
I would like to consolidate the data frame by parsing through the rows, and
where the NAME is identical, consolidate into one row and return the mean.
I can do this for the first lines (Control_1 etc) by using aggregate()
aggregate(DF[,-c(1:2)], by=list(DF$NAME), mean)
but since aggregate looks for unique lines it won't consolidate e.g. lines 5/6
and 7/8.
Is there a way of telling aggregate to grep just the first part of the name
(i.e. up to "~") and consolidate those?
I could pre-grep the file before importing into R, but I'd like to do it within
R if possible.
Thanks for any suggestions
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