Hi,
Here is a solution for this type of error:
Error: ReadItem: unknown type 98, perhaps written by later version of R
Execution halted
Created a script file under the directory where the pgm-s and data
reside and ran there
./script.sh
where script.sh had the following lines
R CMD BATCH ./dc19at1.R ./dc19at1.out
sleep 3
R CMD BATCH ./dc19at2.R ./dc19at2.out
sleep 3
...
etc
The programs ran with no problem.
So what I did is eliminated the full path let's say
R CMD BATCH /a/b/c/dc19at1.R /a/b/c/dc19at1.out
which did not work through bsub or at the command line in a remote server.
I am not sure what is the "type 98 error" meaning in R?
Anybody knows where the R error types are described?
TIA,
Aldi
On 8/21/2012 10:09 AM, Aldi Kraja wrote:
Hi,
I am running a large number of jobs (thousands) in parallel (linux OS
64bit), R version 2.14.1 (2011-12-22), Platform:
x86_64-redhat-linux-gnu (64-bit). Up to yesterday everything ran fine
with jobs in several blocks (block1, block2 etc) of submission. They
are sent to an LSF platform to handle the parallel submission. Today I
see that only one of the blocks (the 19) has not finished correct:
It reports in the out file:
Error: ReadItem: unknown type 98, perhaps written by later version of R
Execution halted
Checking through google one had recommended rm ~/.RData
I applied it, but the run again fails, when submitting through SAS for
block 19.
[SAS in macro lang.] %sysexec bsub R CMD BATCH &fullpath./dc19at&j..R
&fullpath.dc19at&j..out ;
[SAS ] %sysexec sleep 3 ;
<looping through jobs in a block>
If I go to the directory where the R program and the data reside and
apply the same command by hand
R CMD BATCH dc19at1.R dc19at1.out
it works with no problem.
But if I use a similar program (SAS program)
that has been executing the same command successfully for thousand of
jobs in other blocks, the jobs for the block 19 fail.
Error: ReadItem: unknown type 98, perhaps written by later version of R
Execution halted
even in the one I just mentioned if I execute by hand goes well.
Do you know what could be the cause of bsub submission to fail? Any
remedy?
Thank you in advance,
Aldi
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