Dear R users, I have a .txt table that looks like:
transcript_ID C3 C4 CRL_2APR10 CRL_1_15JUL11 CRL_2_15JUL11 C1 CRL_6OCT11c CRL_3DEC11 CRL_13DEC11b LRV_A LRV_B c101054_g1_i2 15.53 231.47 131.86 218.69 16.70 0.00 587.79 0.00 624.32 10.00 6.00 c96583_g1_i2 0.00 10.60 6.30 8.87 0.00 0.00 29.00 0.00 90.94 0.00 0.00 c19380_g1_i1 0.00 9.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 c102980_g1_i10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 c91905_g1_i3 0.00 6.66 65.11 0.00 0.00 0.00 40.92 0.00 55.37 0.00 0.00 c108262_g1_i3 0.00 29.65 2.44 0.00 0.00 0.00 29.33 0.00 338.89 0.00 0.00 c27948_g1_i1 0.00 0.00 0.00 54.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 c14898_g1_i1 0.00 2.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 c105146_g1_i2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 I need to convert all the numeric entries into integers to be able to use DESeq2, e.g.: C3 C4 CRL2APR10 CRL_1_15JUL11 CRL_2_15JUL11 C1 CRL_6OCT11c CRL3DEC11 CRL13DEC11b LRV_A LRV_B c101054_g1_i2 15 231 131 218 16 0 587 0 624 10 6 c96583_g1_i2 0 10 6 8 0 0 29 0 90 0 0 c19380_g1_i1 0 9 0 1 0 0 0 0 0 0 0 c102980_g1_i10 0 0 0 0 0 0 0 0 0 0 0 c91905_g1_i3 0 6 65 0 0 0 40 0 55 0 0 c108262_g1_i3 0 29 2 0 0 0 29 0 338 0 0 c27948_g1_i1 0 0 0 54 0 1 0 0 0 0 0 c14898_g1_i1 0 2 0 1 0 0 0 0 0 0 0 c105146_g1_i2 0 0 0 0 0 0 0 0 0 0 1 âAny help will be welcome. Thanks in advance, Aliciaâ -- Alicia R. Pérez-Porro PhD candidate Giribet lab Department of Organismic and Evolutionary Biology MCZ labs Harvard University 26 Oxford St, Cambridge MA 02138 phone: +1 617-496-5308 fax: +1 617-495-5667 www.oeb.harvard.edu/faculty/giribet/ Department of Marine Ecology Center for Advanced Studies of Blanes (CEAB-CSIC) C/Accés Cala St. Francesc 14 17300 Blanes, Girona, SPAIN phone: +34 972 336 101 fax: +34 972 337 806 www.ceab.csic.es [[alternative HTML version deleted]]
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