Dear All
We are using the dendextend package to modify the plot output from a pvclust
clustering
The model is created with
result <- pvclust(chord.1, method.dist="euclidian",
method.hclust="average",nboot=100000)
The plot is then formatted as following
dend <- as.dendrogram(result)
dend %>%
pvclust_show_signif(result, signif_type = c("au"),alpha=0.05, signif_value =
c(4, 1)) %>% set("labels_cex", c(1.5)) %>% set("labels_col", sp_col) %>%
plot(horiz=TRUE, sub="", xlab="", ylab="",xlim=c(0.31, -0.17), ylim= c(3.5,93))
We are using the pvclust_show_signif function to set the line weight to '4' of
pvclust branches with an alpha of less than 0.05. Is it possible to set
multiple line weights for different alpha values e.g. lwd = 8 when alpha = 0.05
and lwd = 4 when alpha = 0.1?
Best wishes
Tom
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