On 17/11/2015 10:42 AM, Marc Schwartz wrote:

On Nov 17, 2015, at 9:21 AM, John Sorkin <jsor...@grecc.umaryland.edu> wrote:

I am looking for a gentle introduction to SWEAVE, and would appreciate 
recommendations.
I have an R program that I want to run and have the output and plots in one 
document. I believe this can be accomplished with SWEAVE. Unfortunately I don't 
know HTML, but am willing to learn. . . as I said I need a gentle introduction 
to SWEAVE.
Thank you,
John



John,

A couple of initial comments.

First, you will likely get some recommendations to also consider using Knitr:

   http://yihui.name/knitr/

which I do not use myself (I use Sweave), but to be fair, is worth considering 
as an alternative.

He did, and I'd agree with them. I've switched to knitr for all new projects and some old ones. knitr should be thought of as Sweave version 2.

Duncan Murdoch


Second, to create stand alone documents, as opposed to web based content, you 
will likely want the output to be in TeX/LaTeX via Sweave, which can then 
become PDF based documents via the post processing of the TeX/LaTeX source. 
That is what I do for all of my analytic deliverables. You can also use LaTeX 
classes like 'Beamer' to create Powerpoint-like slides for presentation.

Fritz' web site for Sweave is here:

   http://www.statistik.lmu.de/~leisch/Sweave/

and there are some links to supporting materials there with very basic examples.

Another resource is:

   https://beckmw.files.wordpress.com/2014/02/sweave_intro1.pdf

and if you Google for Sweave Introductions and Tutorials, there are a myriad of 
others.

In conjunction with Sweave itself, there are a variety of supporting packages 
on CRAN that have related functionality (e.g. formatted LaTeX output) that are 
worth knowing about and are included in the Reproducible Research task view:

   https://cran.r-project.org/web/views/ReproducibleResearch.html

Regards,

Marc Schwartz

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