I am trying to use the by function to get the SD of each column of a data
frame, stratified by ARM. Using a suggestion provided by both William Dunlap
and Rolf Turner, I have written the code below which fails with the error:
Error in match.fun(FUN) : 'sqrt(var(x))' is not a function, character or
symbol
code:
mySD <- function(x) {sapply(x,sqrt(var(x)))}
class(mySD)
by(goop[,c("a","b","c")],goop[,"Arm"],mySD)
Below I include code which will create goop (thank you Bill for suggesting I
use dput), which will run will recreate mmy error. Any thoughts on why the by
function fails and how to fix it would be appreciated.
Thank you,
John
goop <- structure(c(180L, 153L, 149L, 218L, 217L, 147L, 141L, 141L, 174L,
162L, 163L, 206L, 168L, 227L, 142L, 179L, 270L, 206L, 243L,
134L,
131L, 222L, 142L, 119L, 149L, 190L, 196L, 145L, 185L, 235L,
165L,
246L, 152L, 186L, 222L, 248L, 125L, 149L, 233L, 145L, 154L,
231L,
146L, 161L, 150L, 133L, 115L, 145L, 180L, 202L, 158L, 210L,
153L,
136L, 265L, 255L, 199L, 131L, 110L, 169L, 147L, 133L, 108L,
203L,
185L, 153L, 154L, 207L, 167L, 233L, 135L, 127L, 197L, 245L,
124L,
125L, 146L, 139L, 158L, 211L, 183L, 169L, 137L, 114L, 176L,
143L,
156L, 209L, 163L, 194L, 151L, 238L, 253L, 293L, 208L, 147L,
186L,
179L, 150L, 203L, 112L, 185L, 156L, 127L, 132L, 243L, 177L,
242L,
144L, 140L, 194L, 249L, 109L, 91L, 10163L, 10987L, 19882L,
19899L,
20104L, 20105L, 20167L, 20318L, 20338L, 20392L, 20453L,
20454L,
20467L, 20500L, 20682L, 20687L, 20692L, 20744L, 20750L,
20751L,
20806L, 20848L, 20856L, 20959L, 21023L, 21048L, 21114L,
21134L,
21135L, 21320L, 21329L, 21349L, 21353L, 21521L, 21663L,
21784L,
22031L, 22081L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L,
2L,
2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L,
1L,
2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L), .Dim = c(38L, 5L),
.Dimnames = list(
NULL, c("a", "b", "c", "ID", "Arm")), na.action =
structure(37, class = "omit"))
goop
mySD <- function(x) {sapply(x,sqrt(var(x)))}
class(mySD)
by(goop[,c("a","b","c")],goop[,"Arm"],mySD)
John David Sorkin M.D., Ph.D.
Professor of Medicine
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology and Geriatric
Medicine
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
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