i could make it worl, thanks for your help, it was usefull Pau Marc Muñoz Torres skype: pau_marc http://www.linkedin.com/in/paumarc http://www.researchgate.net/profile/Pau_Marc_Torres3/info/
2017-05-22 15:38 GMT+02:00 Pau Marc Muñoz Torres <paum...@gmail.com>: > hi to you both > > You are right peter, I probably miss understood the system.file function. > I was trying to use it with a package from bioconductor and when i saw that > it didn't work for me, I tested with readxl and still do not working, so I > am doing something wrong with system.file > > the original script was > > > library(SICtools) > > bam1 <- system.file(package='SICtools','extdata','example1.bam') > > the example1.bam file is supposed to be at the working directory (i > changed the directory using setwd()), it was changed to /home/paumarc/Bam > > i tried to change extdata for my working directory but it did not work > > thanks > > Pau Marc Muñoz Torres > skype: pau_marc > http://www.linkedin.com/in/paumarc > http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ > > > 2017-05-22 14:53 GMT+02:00 peter dalgaard <pda...@gmail.com>: > >> >> > On 22 May 2017, at 14:43 , Pau Marc Muñoz Torres <paum...@gmail.com> >> wrote: >> > >> > Hello everybody >> > >> > I am trying to use system.file but it returns not file found >> > >> > what I have done is >> > >> >> sample <- system.file("results.xlsx","estdata", package = >> > "readxl",mustWork = TRUE) >> > Error in system.file("results.xlsx", "estdata", package = "readxl", >> > mustWork = TRUE) : >> > no file found >> > >> > i have checked the path was correct and the file exists with >> > >> > FILES <- file.path("results.xlsx") >> > present <- file.exists(FILES) >> > >> > and it returned a true values. Anyone can tell me which can be the >> problem ? >> >> Not if you don't tell us WHERE you expect to find the file... >> >> Where is it located, and what is the value of FILES above? >> >> It is not unlikely that you misunderstande what system.file() is supposed >> to do. >> >> -pd >> >> >> > >> > thanks >> > >> > Pau Marc Muñoz Torres >> > skype: pau_marc >> > http://www.linkedin.com/in/paumarc >> > http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ >> > >> > [[alternative HTML version deleted]] >> > >> > ______________________________________________ >> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> > https://stat.ethz.ch/mailman/listinfo/r-help >> > PLEASE do read the posting guide http://www.R-project.org/posti >> ng-guide.html >> > and provide commented, minimal, self-contained, reproducible code. >> >> -- >> Peter Dalgaard, Professor, >> Center for Statistics, Copenhagen Business School >> Solbjerg Plads 3, 2000 Frederiksberg, Denmark >> Phone: (+45)38153501 >> Office: A 4.23 >> Email: pd....@cbs.dk Priv: pda...@gmail.com >> >> >> >> >> >> >> >> >> >> > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.