Fedora 9 R 2.7.1 I tried to install R on my Linux system using install.packages("Rcmdr", dependencies=TRUE).
I received many, many, many error messages. I hope someone can suggest a fix. The output from warnings() is listed below. A more detailed list of errors from one of the failed installations is listed below the warnings: > warnings() Warning messages: 1: In install.packages("Rcmdr", dependencies = TRUE) ... : dependency ‘Biobase’ is not available 2: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'maps' had non-zero exit status 3: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'kinship' had non-zero exit status 4: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'ape' had non-zero exit status 5: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'gee' had non-zero exit status 6: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'tkrplot' had non-zero exit status 7: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'kernlab' had non-zero exit status 8: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'akima' had non-zero exit status 9: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'Hmisc' had non-zero exit status 10: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'colorspace' had non-zero exit status 11: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'randomForest' had non-zero exit status 12: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'Matrix' had non-zero exit status 13: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'chron' had non-zero exit status 14: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'e1071' had non-zero exit status 15: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'mlbench' had non-zero exit status 16: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'mvtnorm' had non-zero exit status 17: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'robustbase' had non-zero exit status 18: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'rgl' had non-zero exit status 19: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'RODBC' had non-zero exit status 20: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'mapproj' had non-zero exit status 21: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'Design' had non-zero exit status 22: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'plm' had non-zero exit status 23: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'vcd' had non-zero exit status 24: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'its' had non-zero exit status 25: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'tseries' had non-zero exit status 26: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'ipred' had non-zero exit status 27: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'lme4' had non-zero exit status 28: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'coin' had non-zero exit status 29: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'multcomp' had non-zero exit status 30: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'systemfit' had non-zero exit status 31: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of p32: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'fSeries' had non-zero exit status 33: In install.packages("Rcmdr", dependencies = TRUE) ... : installation of package 'mboost' had non-zero exit status More detailed error messages: * Installing *source* package 'party' ... ** libs gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c Classes.c -o Classes.o In file included from Classes.c:9: party.h:6:15: error: R.h: No such file or directory party.h:7:19: error: Rmath.h: No such file or directory party.h:8:24: error: Rinternals.h: No such file or directory party.h:9:22: error: Rdefines.h: No such file or directory party.h:10:42: error: R_ext/Applic.h: No such file or directory party.h:11:43: error: R_ext/Lapack.h: No such file or directory In file included from party.h:15, from Classes.c:9: Classes.h:3: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘PL2_expectationSym’ Classes.h:67: error: expected ‘)’ before ‘object’ Classes.h:68: error: expected ‘)’ before ‘object’ Classes.h:69: error: expected ‘)’ before ‘object’ Classes.h:70: error: expected ‘)’ before ‘object’ Classes.h:71: error: expected ‘)’ before ‘object’ Classes.h:72: error: expected ‘)’ before ‘object’ Classes.h:73: error: expected ‘)’ before ‘object’ Classes.h:74: error: expected ‘)’ before ‘object’ Classes.h:75: error: expected ‘)’ before ‘object’ Classes.h:76: error: expected ‘)’ before ‘object’ Classes.h:77: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_transformation’ Classes.h:78: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_test_trafo’ Classes.h:79: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_predict_trafo’ Classes.h:80: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_variable’ Classes.h:81: error: expected ‘)’ before ‘object’ Classes.h:82: error: expected ‘)’ before ‘object’ Classes.h:83: error: expected ‘)’ before ‘object’ Classes.h:84: error: expected ‘)’ before ‘object’ Classes.h:85: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_missings’ Classes.h:86: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_ordering’ Classes.h:87: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_levels’ Classes.h:88: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_scores’ Classes.h:89: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_whichNA’ Classes.h:90: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_varmemory’ Classes.h:91: error: expected ‘)’ before ‘object’ Classes.h:92: error: expected ‘)’ before ‘object’ Classes.h:93: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_weights’ Classes.h:94: error: expected ‘)’ before ‘object’ Classes.h:95: error: expected ‘)’ before ‘object’ Classes.h:96: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_varctrl’ Classes.h:97: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_splitctrl’ Classes.h:98: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_gtctrl’ Classes.h:99: error: expected ‘)’ before ‘object’ Classes.h:100: error: expected ‘)’ before ‘object’ Classes.h:101: error: expected ‘)’ before ‘object’ Classes.h:102: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_dontuse’ Classes.h:103: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_dontusetmp’ Classes.h:104: error: expected ‘)’ before ‘object’ Classes.h:105: error: expected ‘)’ before ‘object’ Classes.h:106: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_tgctrl’ Classes.h:107: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_splitstatistics’ Classes.h:108: error: expected ‘)’ before ‘object’ Classes.h:109: error: expected ‘)’ before ‘object’ Classes.h:110: error: expected ‘)’ before ‘object’ Classes.h:111: error: expected ‘)’ before ‘object’ Classes.h:112: error: expected ‘)’ before ‘object’ In file included from party.h:16, from Classes.c:9: Utils.h:5: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘La_svd’ Utils.h:8: error: expected ‘)’ before ‘x’ Utils.h:15: error: expected ‘)’ before ‘x’ Utils.h:16: error: expected ‘)’ before ‘y’ Utils.h:19: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Utils.h:21: error: expected ‘)’ before ‘subtree’ Utils.h:22: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Utils.h:22: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Utils.h:22: error: expected declaration specifiers or ‘...’ before ‘SEXP’ In file included from party.h:17, from Classes.c:9: mvt.h:5: error: ‘F77_NAME’ declared as function returning a function mvt.h:5: warning: parameter names (without types) in function declaration In file included from party.h:18, from Classes.c:9: LinearStatistic.h:8: error: expected declaration specifiers or ‘...’ before ‘SEXP’ LinearStatistic.h:12: warning: type defaults to ‘int’ in declaration of ‘SEXP’ LinearStatistic.h:12: error: expected ‘;’, ‘,’ or ‘)’ before ‘expcovinf’ LinearStatistic.h:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘R_ExpectCovarInfluence’ In file included from party.h:20, from Classes.c:9: Distributions.h:5: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Distributions.h:5: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Distributions.h:6: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Distributions.h:6: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Distributions.h:6: error: expected declaration specifiers or ‘...’ before ‘SEXP’ In file included from party.h:21, from Classes.c:9: Convenience.h:5: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Convenience.h:5: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Convenience.h:6: error: expected ‘)’ before ‘linexpcov’ Convenience.h:7: error: expected ‘)’ before ‘linexpcov’ Convenience.h:8: warning: type defaults to ‘int’ in declaration of ‘SEXP’ Convenience.h:8: error: expected ‘;’, ‘,’ or ‘)’ before ‘linexpcov’ Convenience.h:9: error: expected declaration specifiers or ‘...’ before ‘SEXP’ In file included from party.h:22, from Classes.c:9: S3Classes.h:2: error: expected ‘)’ before ‘node’ S3Classes.h:3: error: expected ‘)’ before ‘node’ S3Classes.h:4: error: expected ‘)’ before ‘node’ S3Classes.h:5: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_nodeweights’ S3Classes.h:6: error: expected ‘)’ before ‘node’ S3Classes.h:7: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_teststat’ S3Classes.h:8: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_criterion’ S3Classes.h:9: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_maxcriterion’ S3Classes.h:10: error: expected ‘)’ before ‘node’ S3Classes.h:11: error: expected ‘)’ before ‘node’ S3Classes.h:12: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_primarysplit’ S3Classes.h:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_surrogatesplits’ S3Classes.h:14: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_prediction’ S3Classes.h:15: error: expected ‘)’ before ‘split’ S3Classes.h:16: error: expected ‘)’ before ‘split’ S3Classes.h:17: error: expected ‘)’ before ‘split’ S3Classes.h:18: error: expected ‘)’ before ‘split’ S3Classes.h:19: error: expected ‘)’ before ‘split’ S3Classes.h:20: error: expected ‘)’ before ‘split’ S3Classes.h:21: error: expected ‘)’ before ‘split’ S3Classes.h:22: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_splitpoint’ S3Classes.h:23: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_splitstatistics’ S3Classes.h:24: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_leftnode’ S3Classes.h:25: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_rightnode’ S3Classes.h:26: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘S3get_table’ S3Classes.h:27: error: expected ‘)’ before ‘split’ S3Classes.h:28: error: expected ‘)’ before ‘split’ In file included from party.h:23, from Classes.c:9: IndependenceTest.h:2: error: expected ‘)’ before ‘learnsample’ IndependenceTest.h:4: warning: type defaults to ‘int’ in declaration of ‘SEXP’ IndependenceTest.h:4: error: expected ‘;’, ‘,’ or ‘)’ before ‘linexpcov’ IndependenceTest.h:6: warning: type defaults to ‘int’ in declaration of ‘SEXP’ IndependenceTest.h:6: error: expected ‘;’, ‘,’ or ‘)’ before ‘linexpcov’ In file included from party.h:24, from Classes.c:9: Splits.h:5: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Splits.h:5: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Splits.h:6: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Splits.h:13: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Splits.h:13: error: expected declaration specifiers or ‘...’ before ‘SEXP’ Splits.h:14: error: expected declaration specifiers or ‘...’ before ‘SEXP’ In file included from party.h:25, from Classes.c:9: Node.h:2: error: expected ‘)’ before ‘node’ In file included from party.h:26, from Classes.c:9: Predict.h:2: error: expected ‘)’ before ‘node’ In file included from party.h:27, from Classes.c:9: SurrogateSplits.h:2: error: expected ‘)’ before ‘node’ SurrogateSplits.h:3: error: expected ‘)’ before ‘node’ In file included from party.h:28, from Classes.c:9: TreeGrow.h:2: error: expected ‘)’ before ‘node’ Classes.c:12: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘PL2_expectationSym’ Classes.c:77: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘party_init’ Classes.c:147: error: expected ‘)’ before ‘object’ Classes.c:151: error: expected ‘)’ before ‘object’ Classes.c:155: error: expected ‘)’ before ‘object’ Classes.c:159: error: expected ‘)’ before ‘object’ Classes.c:163: error: expected ‘)’ before ‘object’ Classes.c:167: error: expected ‘)’ before ‘object’ Classes.c:171: error: expected ‘)’ before ‘object’ Classes.c:175: error: expected ‘)’ before ‘object’ Classes.c:179: error: expected ‘)’ before ‘object’ Classes.c:183: error: expected ‘)’ before ‘object’ Classes.c:187: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_transformation’ Classes.c:193: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_test_trafo’ Classes.c:197: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_predict_trafo’ Classes.c:202: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_variable’ Classes.c:208: error: expected ‘)’ before ‘object’ Classes.c:212: error: expected ‘)’ before ‘object’ Classes.c:216: error: expected ‘)’ before ‘object’ Classes.c:220: error: expected ‘)’ before ‘object’ Classes.c:224: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_ordering’ Classes.c:235: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_levels’ Classes.c:247: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_scores’ Classes.c:258: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_missings’ Classes.c:269: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_varmemory’ Classes.c:274: error: expected ‘)’ before ‘object’ Classes.c:278: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_splitstatistics’ Classes.c:282: error: expected ‘)’ before ‘object’ Classes.c:286: error: expected ‘)’ before ‘object’ Classes.c:290: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_weights’ Classes.c:294: error: expected ‘)’ before ‘object’ Classes.c:298: error: expected ‘)’ before ‘object’ Classes.c:302: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_varctrl’ Classes.c:306: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_splitctrl’ Classes.c:310: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_gtctrl’ Classes.c:314: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_tgctrl’ Classes.c:318: error: expected ‘)’ before ‘object’ Classes.c:322: error: expected ‘)’ before ‘object’ Classes.c:326: error: expected ‘)’ before ‘object’ Classes.c:330: error: expected ‘)’ before ‘object’ Classes.c:334: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_dontuse’ Classes.c:338: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘get_dontusetmp’ Classes.c:342: error: expected ‘)’ before ‘object’ Classes.c:346: error: expected ‘)’ before ‘object’ Classes.c:354: error: expected ‘)’ before ‘object’ Classes.c:358: error: expected ‘)’ before ‘object’ Classes.c:362: error: expected ‘)’ before ‘object’ make: *** [Classes.o] Error 1 ERROR: compilation failed for package 'party' ** Removing '/usr/lib/R/library/party' John Sorkin M.D., Ph.D. Chief, Biostatistics and Informatics Baltimore VA Medical Center GRECC, University of Maryland School of Medicine Claude D. Pepper OAIC, University of Maryland Clinical Nutrition Research Unit, and Baltimore VA Center Stroke of Excellence University of Maryland School of Medicine Division of Gerontology Baltimore VA Medical Center 10 North Greene Street GRECC (BT/18/GR) Baltimore, MD 21201-1524 (Phone) 410-605-7119 (Fax) 410-605-7913 (Please call phone number above prior to faxing) [EMAIL PROTECTED] Confidentiality Statement: This email message, including any attachments, is for th...{{dropped:6}} ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.