Re: [R] [R-pkgs] package installation fails (RandomFields)

Uwe Ligges Thu, 11 Jun 2009 08:45:06 -0700


William Dunlap wrote:

The offending lines don't look right to me:

     38 typedef struct key_type;
    261 typedef struct mpp_storage;
    309 typedef struct cov_fct;

Shouldn't they be 'typedef struct struct_name typedefed_name'?
Later in the file there are proper typedef's for these things.



In that case, can you please report it to the RandomFields maintainer?

Thank you very much,
Uwe Ligges

Bill Dunlap
TIBCO Software Inc - Spotfire Division
wdunlap tibco.com
-----Original Message-----
From: r-help-boun...@r-project.org[mailto:r-help-boun...@r-project.org] On Behalf Of Martin Maechler
Sent: Thursday, June 11, 2009 12:42 AM
To: Drew Hoysak
Cc: r-help@r-project.org
Subject: Re: [R] [R-pkgs] package installation fails (RandomFields)

[[ NOTE:  This accidentally was approved to go to  R-packages,
          it should never have gone there, and I have deleted it
          from the archives.
Please *only* reply to R-help (and the OP)!]]
"DH" == Drew Hoysak <hoy...@wcgwave.ca>
    on Wed, 10 Jun 2009 14:40:32 -0500 writes:
DH> I have been unable to install the packageRandomFields. I am using RDH> 2.9.0-4 on Ubuntu 9.04.
How exactly did you install R? Just as ubuntu package?{probably, given the somewhat particular version number}
    DH> To install, I use the command:

    DH> sudo R CMD INSTALL RandomFields_1.3.37.tar.gz


    DH> The output follows below. Any help Would be appreciated.

    DH> D. Hoysak
    DH> Brandon University


    DH> * Installing to library '/usr/local/lib/R/site-library'
    DH> * Installing *source* package 'RandomFields' ...
    DH> ** libs
    DH> g++ -I/usr/share/R/include -g -fpic -g -O2 -c D.H.cc -o D.H.o
    DH> In file included from D.H.cc:27:
DH> RFsimu.h:38: warning: 'typedef' was ignored in thisdeclarationDH> RFsimu.h:261: warning: 'typedef' was ignored in thisdeclarationDH> RFsimu.h:309: warning: 'typedef' was ignored in thisdeclaration
    [..........................]
    [..........................]
DH> RFsimu.h:309: warning: 'typedef' was ignored in thisdeclarationDH> g++ -I/usr/share/R/include -g -fpic -g -O2 -cwin_linux_aux.cc -oDH> win_linux_aux.oDH> g++ -shared -o RandomFields.so D.H.o Hyperfcts.oMPP.o MPPFcts.oDH> RFCovFcts.o RFcircembed.o RFdirect.o RFempvario.o RFgetNset.oDH> RFhyperplan.o RFinitNerror.o RFnugget.o RFother.oRFsimu.o RFspectral.oDH> RFtbm.o Xempvario.o addownfctns.o auxiliary.o avltr.oextremes.oDH> modelling.o win_linux_aux.o -llapack -L/usr/lib/R/lib -lR
    DH> /usr/bin/ld: cannot find -llapack
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

This looks like a setup problem of the R installation you have;
I'd guess that you would also see problems installing other R
packages that rely on LAPACK.



    DH> collect2: ld returned 1 exit status
    DH> make: *** [RandomFields.so] Error 1
    DH> ERROR: compilation failed for package 'RandomFields'
    DH> * Removing '/usr/local/lib/R/site-library/RandomFields'

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Re: [R] [R-pkgs] package installation fails (RandomFields)

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