Hi, Frank,
I met the same problem. My data does not have NA, when I run
fit <- lrm(Y_t~.,data=X)
The error message is:
singular information matrix in lrm.fit (rank= 35 ). Offending variable(s):
X35
Error in j:(j + params[i] - 1) : NA/NaN argument
How can I avoid this?
Thank you,
Annie
On Fri, Sep 4, 2009 at 2:44 PM, Frank E Harrell Jr <f.harr...@vanderbilt.edu
> wrote:
> Ping-Hsun Hsieh wrote:
>
>> Hi,
>>
>> A error message arose while I was trying to fit a ordinal model with lrm()
>> I am using R 2.8 with Design package.
>>
>> Here is a small set of mydata:
>> RC RS Sex CovA CovB CovC CovD CovE
>> 2 1 0 1 1 0 -0.005575280 2
>> 2 1 0 1 0 1 -0.001959580 2
>> 3 0 0 0 1 0 -0.004725880 2
>> 0 0 0 1 0 0 -0.005504850 2
>> 2 1 1 0 0 0 -0.003880170 1
>> 2 1 0 0 1 0 -0.006074230 2
>> 2 1 0 0 1 1 -0.003963920 2
>> 2 1 0 0 1 0 0.000658230 2
>> 2 1 0 1 0 1 -0.002033610 2
>> 0 0 0 0 0 1 -0.007761770 2
>> 0 0 0 0 1 1 -0.000951784 2
>>
>> Note: In the complete data, there are NAs. But the error messages showed
>> in both the complete and above sets.
>>
>> attach(mydata)
>>> lrm(RC~RS+Sex+CovA+CovB+CovC+CovD+CovE,data=mydata,na.action=na.pass)
>>>
>> singular information matrix in lrm.fit (rank= 8 ). Offending variable(s):
>> CovE Error in j:(j + params[i] - 1) : NA/NaN argument
>>
>> detach(mydata)
>>> lrm(mydata$RC~ mydata$RS+ mydata$Sex+ mydata$CovA+ mydata$CovB+
>>> mydata$CovC+ mydata$CovD+ mydata$CovE,data=mydata,na.action=na.pass)
>>>
>>
> Please read the documentation. Use data=. Don't use $ in variables in the
> model. I don't know what na.pass is. lrm does not allow NAs to be used in
> the attempted model fit.
>
> Frank
>
> Error in if (!length(fname) || !any(fname == zname)) { : missing value
>> where TRUE/FALSE needed
>>
>>
>> I have debugged for a while, but no success. Does anyone know what
>> happens?
>>
>> Thanks,
>> Mike
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html>
>> and provide commented, minimal, self-contained, reproducible code.
>>
>>
>
> --
> Frank E Harrell Jr Professor and Chair School of Medicine
> Department of Biostatistics Vanderbilt University
>
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html>
> and provide commented, minimal, self-contained, reproducible code.
>
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