On Tue, 2005-07-19 at 12:28 -0400, Duncan Murdoch wrote: > On 7/19/2005 12:10 PM, mark salsburg wrote: > > I have two files to compare, one is a regular txt file that I can read > > in no prob. > > > > The other is a .gct file (How do I read in this one?) > > > > I tried a simple > > > > read.table("data.gct", header = T) > > > > How do you suggest reading in this file?? > > > > .gct is not a standard filename extension. You need to know what is in > that file. Where did you get it? What program created it? > > Chances are the easiest thing to do is to get the program that created > it to export in a well known format, e.g. .csv. > > Duncan Murdoch
A quick Google search would suggest "Gene Cluster Text" file: http://www.broad.mit.edu/cancer/software/genepattern/tutorial/gp_tutorial_fileformats.html#gct produced by Gene Pattern: http://www.broad.mit.edu/cancer/software/genepattern/ If correct, I would point Mark to the Bioconductor folks for more information and assistance: http://www.bioconductor.org/ HTH, Marc Schwartz ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html