Duncan, Thanks for the update on the update. I downloaded and installed it and receive the following messages on installation and require(RSPython). Also, checked to make sure python was on my path and working and it is (also below). I am running openSuse 10.2. sessionInfo() follows as well.
Mark * DONE (RSPython) The downloaded packages are in /tmp/Rtmp4QozuD/downloaded_packages Warning message: In install.packages(pkgs = "RSPython", repos = "http://www.omegahat.org/R") : dependency ‘Python’ is not available > require(RSPython) Loading required package: RSPython Attaching package: 'RSPython' The following object(s) are masked from package:base : .Call Warning message: In .Call("InitPython") : the Python callback manager has been registered implicitly using the defaults (referenceManager())! > Python is installed on my system and can be invoked from the command line: [EMAIL PROTECTED]:~> python Python 2.5 (r25:51908, May 25 2007, 16:14:04) [GCC 4.1.2 20061115 (prerelease) (SUSE Linux)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> quit() [EMAIL PROTECTED]:~> whereis python python: /usr/bin/python2.5 /usr/bin/python2.5-config /usr/bin/python /usr/lib/python2.5 /usr/lib/python /usr/bin/X11/python2.5 /usr/bin/X11/python2.5-config /usr/bin/X11/python /usr/include/python2.5 /usr/include/python /usr/share/man/man1/python.1.gz [EMAIL PROTECTED]:~> > sessionInfo() R version 2.6.0 Under development (unstable) (2007-08-01 r42387) i686-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] splines tools stats graphics grDevices utils datasets [8] methods base other attached packages: [1] RSPython_0.8-0 affycoretools_1.9.3 annaffy_1.9.1 [4] xtable_1.5-0 gcrma_2.9.1 matchprobes_1.9.10 [7] biomaRt_1.11.4 RCurl_0.8-1 XML_1.9-0 [10] GOstats_2.3.8 Category_2.3.18 genefilter_1.15.9 [13] survival_2.32 KEGG_1.17.0 RBGL_1.13.3 [16] annotate_1.15.3 AnnotationDbi_0.0.88 RSQLite_0.6-0 [19] DBI_0.2-3 GO_1.17.0 limma_2.11.9 [22] affy_1.15.7 preprocessCore_0.99.12 affyio_1.5.6 [25] Biobase_1.15.23 graph_1.15.10 loaded via a namespace (and not attached): [1] cluster_1.11.7 > Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry Indiana University School of Medicine 15032 Hunter Court, Westfield, IN 46074 (317) 490-5129 Work, & Mobile & VoiceMail (317) 663-0513 Home (no voice mail please) ****************************************************************** Duncan Temple Lang wrote: > > Mark, > Just thought I'd let you know that I did get a chance to > make the changes and some others besides and there is a new > RSPython release on the Omegahat web site. > > Thanks, > D. > > Mark W Kimpel wrote: >> I can compile RSPython without difficulty, been when I try to load it, I >> get the error messages below. Also below are some cryptic warnings I get >> on R boot (in case these are pertinent) and my sessionInfo(). >> >> Any help is appreciated. Thanks, Mark >> >> Warning messages: >> 1: In .updateMethodsInTable(fdef, where, attach) : >> Couldn't find methods table for "conditional", package "Category" may >> be out of date >> 2: In .updateMethodsInTable(fdef, where, attach) : >> Methods list for generic "conditional" not found >>> require(RSPython) >> Loading required package: RSPython >> Error in dyn.load(file, ...) : >> unable to load shared library >> '/home/mkimpel/R_HOME/site-library/RSPython/libs/RSPython.so': >> /home/mkimpel/R_HOME/site-library/RSPython/libs/RSPython.so: >> undefined symbol: Rf_initEmbeddedR >>> sessionInfo() >> R version 2.6.0 Under development (unstable) (2007-08-01 r42387) >> i686-pc-linux-gnu >> >> locale: >> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C >> >> >> >> attached base packages: >> [1] splines tools stats graphics grDevices utils datasets >> [8] methods base >> >> other attached packages: >> [1] affycoretools_1.9.3 annaffy_1.9.1 xtable_1.5-0 >> [4] gcrma_2.9.1 matchprobes_1.9.10 biomaRt_1.11.4 >> [7] RCurl_0.8-1 XML_1.9-0 GOstats_2.3.8 >> [10] Category_2.3.18 genefilter_1.15.9 survival_2.32 >> [13] KEGG_1.17.0 RBGL_1.13.3 annotate_1.15.3 >> [16] AnnotationDbi_0.0.88 RSQLite_0.6-0 DBI_0.2-3 >> [19] GO_1.17.0 limma_2.11.9 affy_1.15.7 >> [22] preprocessCore_0.99.12 affyio_1.5.6 Biobase_1.15.23 >> [25] graph_1.15.10 >> >> loaded via a namespace (and not attached): >> [1] cluster_1.11.7 rcompgen_0.1-15 >> >> >> --- >> >> Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry >> Indiana University School of Medicine >> >> 15032 Hunter Court, Westfield, IN 46074 >> >> (317) 490-5129 Work, & Mobile & VoiceMail >> (317) 663-0513 Home (no voice mail please) >> >> ****************************************************************** >> >> > ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.