Thanks Simon. Starting with a fresh source directory and building
one level up from the source did indeed resolve everything just as
https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006470.html
My usual set of packages also installed fine except for rgl once I
realized that I need
to invoke R as R --arch x86_64.
Thanks for your patience,
Roger
PS. Is the rgl a known issue? I get
checking for X... no
configure: error: X11 not found but required, configure aborted.
ERROR: configuration failed for package 'rgl'
* removing '/Library/Frameworks/R.framework/Versions/2.10/Resources/
library/rgl'
but
> sessionInfo()
R version 2.10.0 alpha (2009-10-09 r50012)
i386-apple-darwin10.0.0
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
> capabilities()
jpeg png tiff tcltk X11 aqua http/ftp sockets
TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE
libxml fifo cledit iconv NLS profmem cairo
TRUE TRUE TRUE TRUE TRUE FALSE FALSE
On Oct 11, 2009, at 3:36 PM, Simon Urbanek wrote:
Roger,
from your logs you are still using the wrong compilers (missing -
arch flags) and not following the instructions (you're building in
the sources as far as I can tell). Please make sure you're setting
FC and F77 correctly including the -arch flag and don't build in the
sources. If in doubt, please send us the exact configure line you're
using. (And make sure you remove everything in the build directory
before re-trying).
Cheers,
Simon
On Oct 11, 2009, at 3:54 PM, Roger Koenker wrote:
Simon,
I read this thread,
https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006463.html
but didn't see this post:
https://stat.ethz.ch/pipermail/r-sig-mac/2009-September/006470.html
Unfortunately, I can't get this to work either, the configure step
seems to
end normally, although there is a warning about "missing packages.
but
make -j8 && make install
ends with error: cannot use Fortran. But
yzzy: which gfortran /usr/local/bin/gfortran yzzy:
gfortran --version
GNU Fortran (GCC) 4.2.3
Copyright (C) 2007 Free Software Foundation, Inc.
As for the binary install, the pkg installer produced eventually
a window that said "Failed" in red rather than the usual green
Installation Successful -- but it wasn't clear where to look
for the entrails. I've replaced the old config.log on the web
with the new one based on the recommended configure lines.
On Oct 11, 2009, at 2:21 PM, Simon Urbanek wrote:
Roger,
please read the list before posing - I have even posted detailed
instructions for SL (you are mixing 32 bit and 64 bit). As for the
binary install -- can you, please, share the details with us?
Thanks,
Simon
On Oct 11, 2009, at 1:19 PM, Roger Koenker wrote:
I am trying to install R-alpha R-2.10.0 (yesterdays version) on a
mac pro system that I've
recently upgraded to SL and xcode 3.2. I've tried both the
binary install which fails, and
building from source: the config.log file can be seen here:
http://www.econ.uiuc.edu/~roger/config.log
Version 2.9.2 built from sources without problems after the SL
upgrade.... which I
took as a good omen for the general sanity of the system, but
apparently this was
a mistake.
I presume that this has something to do with conflicts with old
gfortrans. I've installed
gfortran 4.2.3 but perhaps there are remnants of older versions
still hanging around?
Many thanks for any hints,
Roger
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