Hi Steve,

I have found the same thing with plot.phylo().  The same effect can be 
accomplished by the following two commands:

 > plot(tree) # tree is your "phylo" object
 > title("desired title") # "desired title" is what you would normally 
give to "main"

You may have already figured this out, but in case not - I thought I 
would pass it along.

- Liam

Liam J. Revell
NESCent, Duke University
web: http://anolis.oeb.harvard.edu/~liam/
email: lrev...@nescent.org, (new) liam.rev...@umb.edu
(new) blog: http://phytools.blogspot.com


On 12/29/2010 12:42 PM, Steve L wrote:
> I've tried plotting the example trees in the ape package as well as my own
> using the 'main' parameter to set the title of my plots, but no matter what
> I set the 'main' parameter to, it doesn't print any text above the plot.  Is
> this a bug?
>
> Steve
>
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