This is mostly directed towards Dr. Paradis, but here goes.
I realize that ape computes the Felsenstein contrasts that incorporate
Felsenstein's within species variance.
However, does anyone have code in R for doing the complete method proposed by
Felsenstein, including the likelihood ratio test he suggests?
Another question: If one wanted to compare this phylogenetically controlled
correlation between traits to a traditional correlation including within
species variation, could you simply use a star phylogeny instead of the known
phylogeny?
Thanks! Scott
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