I think the package phybase has functions for looking at gene trees in species trees that could be modified for this. The package has been purged from CRAN (well, archived), but you can still install from source. I'm CCing the package author, Liang Liu, to see if he has any ideas.
Best, Brian _______________________________________ Brian O'Meara Assistant Professor Dept. of Ecology & Evolutionary Biology U. of Tennessee, Knoxville http://www.brianomeara.info Students wanted: Applications due Dec. 15, annually Postdoc collaborators wanted: Check NIMBioS' website Calendar: http://www.brianomeara.info/calendars/omeara On Mon, Jul 8, 2013 at 7:27 AM, Melisa Olave <melizz...@hotmail.com> wrote: > just wondering if you found the way to count deep coal in R?? > I'm trying to do the same... with no success! > > thank you! > Melisa > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
