Dear list members,
I am trying to read a tree into R ('ape' package). I downloaded the latest
versions.The tree has many polytomies and that might be the problem. It contains ten species and each species contains of a different number of individuals (those are the polytomies). I attached it here. I tried read.nexus ...and get: Error in trees[[i]] : subscript out of bounds I tried read.tree #using a newick format for the tree) ...and get: Error in if (tp[3] != "") obj$node.label <- tp[3] : missing value where TRUE/FALSE needed I came across a "Robust Newick tree reader" by Liam Revell and tied the code he provides (http://www.phytools.org/read.newick/v0.5/read.newick.R) but I can't make it work. Can somebody get the tree into R? Please let me know if you know what's wrong Thanks a lot Anna * * * * * * * * * * * University of Cape Town Animal Evolution and Systematics Group Department of Biological Sciences Room 3.32 Tel: +27 (0)21 6502405 Fax: +27 (0)21 6502718 ________________________________ UNIVERSITY OF CAPE TOWN This e-mail is subject to the UCT ICT policies and e-mail disclaimer published on our website at http://www.uct.ac.za/about/policies/emaildisclaimer/ or obtainable from +27 21 650 9111. This e-mail is intended only for the person(s) to whom it is addressed. If the e-mail has reached you in error, please notify the author. If you are not the intended recipient of the e-mail you may not use, disclose, copy, redirect or print the content. If this e-mail is not related to the business of UCT it is sent by the sender in the sender's individual capacity.
IndTree.nwk
Description: IndTree.nwk
IndTree.nex
Description: IndTree.nex
_______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
