I agree with Brian that bootstrapping or likelihood profiles are a good way to determine confidence intervals on your parameters. But I disagree with his suggestion that ability to estimate parameters is a proper component of model selection. It's important to realize that the width of confidence regions is an indication of the information content of the data relative to those parameters. The fact that two parameter values have equal or very similar likelihoods means that the data are agnostic as to their relative explanatory value. To put it another way, if you are asking a question that hinges on the value of a parameter and the confidence interval for that parameter is so wide that your question goes unanswered, this is because the data do not contain an answer to your question. Therefore, the only way to get such an answer is to get better data. One is, of course, always free to make additional or different assumptions (such as a different model as Brian suggests or imposing a prior), but do not make the mistake of confusing assumptions with information. This is what you would be doing if you were, for example, to reject a model with a high likelihood but poorly identified parameters in favor of one with a low likelihood but precise estimates.
-- Aaron A. King, Ph.D. Ecology & Evolutionary Biology Mathematics Center for the Study of Complex Systems University of Michigan GPG Public Key: 0x15780975 [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/