I'd like to compute a maximum agreement subtree (MAST) from two large (2269 taxa) unrooted, non-binary trees, each of identical taxa. It's simply a comparison of a reference tree to a computed tree.
The data is here as simple Newick, no branch lengths: https://gist.github.com/rossmounce/faf85ee4ea05b79a3d3d Is there anything in R that can compute the MAST for two large trees? It seems like if anything can do it, it would be Dendroscope but despite a dazzling array of options I can't seem to find MAST. Non-R solutions also welcome. Thanks, Ross -- -- -/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/- Ross Mounce, PhD Dept. of Plant Sciences, University of Cambridge www.rossmounce.co.uk _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
