Hi Ting-Wen.
Are you using the latest version of ape? Emmanuel released ape v.4.0
yesterday with a bug fix for that function.
Best,
Eduardo
2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen <
ting-wen.c...@biologie.uni-goettingen.de>:
> Dear all,
>
> recently I got an error when downloading sequences in R using MacOS 10.12
> (but no problem when using WIndows 7). I was using the function
> read.GenBank in package ape and pretty sure my laptop was connecting to the
> internet. Following is how the error looks like:
>
> R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch"
> Copyright (C) 2016 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin13.4.0 (64-bit)
> ...
> [R.app GUI 1.68 (7288) x86_64-apple-darwin13.4.0]
>
> > library(ape)
> > read.GenBank("U15717")
> Error in file(file, "r") : cannot open the connection
>
> Does anybody know how to solve this problem?
>
> All the best
> Ting-Wen
>
> --
> Ting-Wen Chen
> J.F. Blumenbach Institute of Zoology and Anthropology
> Georg August University Goettingen
> Berliner Str. 28
> D-37073 Goettingen, Germany
> Tel: +49-55139-10943
>
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