I am using the ancThresh model in the phytools package for 172 taxa. For
model we have the liabilities, parameters, MCMC and alpha values output.
When I tried getting DIC values from the threshDIC function I got Infs for
both the OU model and the Lambda model.The error output I have been
receiving is posted below:
> BMThreshDIC <-threshDIC(scaled.tree, AT.data, ancestralBM, burnin=2000000)
**** NOTE: no sequence provided, column order in x
> OUThreshDIC
Dbar Dhat pD DIC
2109.678 Inf -Inf -Inf
Has anyone experienced this error before? Any advice on how to fix this
error would be greatly appreciated.
--
Aja Carter
PhD Candidate
Department of Earth and Environmental Sciences
University of Pennsylvania
[[alternative HTML version deleted]]
_______________________________________________
R-sig-phylo mailing list - R-sig-phylo@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
