Hi Sebastian, there is an implementation of the SH-test and SOWH-test in phangorn. Send me an mail off list if you have problems using them. Regards, Klaus
On Jun 8, 2018 8:50 AM, "Sebastian Y. Müller" <sm...@cam.ac.uk> wrote: Dear all, I'd was wondering how to best perform a test to determine test disagreement (congruence test) in R? Additional information can be found in Planet et al (DOI: 10.1016/j.jbi.2005.08.008). A common test seems the Shimodaira-Hasegawa Test (SH-test) which used to be implemented in APE: https://www.rdocumentation.org/packages/ape/versions/2.3-3/topics/sh.test However, it seem to have disappeared in recent versions (e.g. ape 5.0). Did this happen for a reason? Or maybe it has been replaced by a more appropriate test? Failing this, is anyone aware of other software to perform SH-, KH- or SOWH-tests? Thanks for any help! -- Dr. Sebastian Müller Department of Plant Sciences University of Cambridge Downing Street, Cambridge, CB2 3EA, UK http://www.plantsci.cam.ac.uk/directory/mueller-sebastian Phone: 0044 1223 748976 _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
