Although not directly related to phylogenetics the tools learned may be very useful to anyone analysis phylogenetic data with a spatial component.
https://www.prstatistics.com/course/introduction-to-gis-and-spatial-analysis-with-r-gisr01/ This course will be delivered by Luca Nelli from the 22nd - 26th of April in Glasgow City Centre Course overview: This course aims at providing audience with the essential tools for working with spatially explicit data within the statistical environment R, with particular reference to ecological applications (e.g. species distribution models, resources and habitat selection, home range analyses…). Practical sessions will primarily use the free statistical software, R – prior experience (even if some practice before you come) will be useful. Example data will be provided but participants may also bring their own data. Course program Monday 22nd – Classes from 09:30 to 17:30 Introduction to GIS: overview of main softwares. File formats. Coordinate reference systems. Types and structure of spatial objects in R Generating and manipulating spatial objects, projections and transformations. Overview of main libraries for spatial objects: sp, sf, rgeos, rgdal, leaflet, mapview, raster. Tuesday 23rd – Classes from 09:30 to 17:30 Introduction to raster data. Plot and visualisation of raster. Informative and non-informative rasters. Terrain tools. RasterStack. Operations with raster. Wednesday 24th – Classes from 09:30 to 17:30 Vector data: from simple points to SpatialPointsDataFrame (and SpatialLinesDataFrame and SpatialPolygonsDataFrame). How to import and manipulate vector data. Plot and visualisation of vectors. Geoprocessing tools. Overlay, clip, intersection, union, difference. Proximity analyses. Conversion tools (vector to raster and viceversa). Thursday 25th – Classes from 09:30 to 17:30 More advanced GIS analyses in R: How to interact vector and raster. Cropping and masking spatial objects. Zonal statistics and landscape metrics. Extracting covariate data and other simple GIS operations in R. Friday 26th – Classes from 09:30 to 16:00 Combining QGIS and R. Plotting interactive maps with leaflet and mapview. Email oliverhoo...@prstatistics.com Check out our sister sites, www.PRstatistics.com (Ecology and Life Sciences) www.PRinformatics.com (Bioinformatics and data science) www.PSstatistics.com (Behaviour and cognition) 1. March 25th – 29th 2019 LANDSCAPE GENETIC DATA ANALYSIS USING R (LNDG03) Glasgow, Scotland, Prof. Rodney Dyer http://www.prstatistics.com/course/landscape-genetic-data-analysis-using-r-lndg03/ 2. April 1st – 5th 2019 INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01) Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre http://www.psstatistics.com/course/introduction-to-statistics-using-r-for-psychologists-ipsy02/ 3. April 1st – 5th 2019 INDIVIDUAL BASED MODELS FOR ECOLOGSITS (IBME01) Glasgow, Scotland, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/individual-based-models-using-r-and-netlogo-ibms01/ 4. April 8th – 12th 2019 MACHINE LEARNING (MLUR01) Glasgow, Scotland, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/machine-learning-using-r-mlur01/ 5. April 15th – 19th 2019 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB06) Athens, GREECE,, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists-ipyb07/ 6. April 22nd – 26th 2019 GIS USING R (GISR) Glasgow, Scotland, Dr Luca Nelli https://www.prstatistics.com/course/gis-using-r-gisr01/ 7. April 29th – May 3rd 2019 MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES IN R WITH THE VEGAN PACKAGE (VGNR02) Orford Musique, Quebec, Canada, Dr. Guillaume Blanchet https://www.prstatistics.com/course/multivariate-analysis-of-ecological-communities-in-r-with-the-vegan-package-vgnr02/ 8. May 6th – 10th 2019 AN EXPLORATION OF R FOR PSYCHOLOGISTS: FROM DATA HANDLING TO MULTILEVEL MODELLING (XPLR01) Myuna Bay, AUSTRALIA, Dr. Sean Murphy https://www.psstatistics.com/course/an-exploration-of-r-for-psychologists-from-data-handling-to-multilevel-modelling-xplr01/ 9. May 20th – 24th 2019 MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV03) Myuna Bay, AUSTRALIA, Prof. David Warton https://www.prstatistics.com/course/model-based-multivariate-analysis-of-abundance-data-using-r-mbmv03/ 10. May 20th – 24th 2019 MACHINE LEARNING (MLUR02) Myuna Bay, AUSTRALIA, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/machine-learning-using-r-mlur02/ 11. June 10th – 14th 2019 STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04) Glasgow, Scotland, Dr. Andrew Parnell, Dr. Andrew Jackson www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/ 12. June 17th – 21st 2019 SPATIAL MODELLING AND ANALYSIS OF ADAPTIVE GENOMIC VARIATION (SPGN01) Glasgow, Dr. Matt Fitzpatrick https://www.prstatistics.com/course/spatial-modelling-and-analysis-of-adaptive-genomic-variation-spgn01/ 13. June 17th – 21st 2019 INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB06) Glasgow, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/introduction-to-python-for-biologists-ipyb06/ 14. June 24th – 28th 2019 MICROBIOME DATA ANALYSIS USING QIIME2 (MBQM01) Glasgow, Scotland, Dr. Yoshiki Vazquez Baeza, Dr. Antonio Gonzalez Pena https://www.prinformatics.com/course/microbiome-data-analysis-using-qiime2-mbqm01/ 15. June 24th – 28th 2019 ADVANCED PYTHON FOR BIOLOGISTS (APYB03) Glasgow, Scotland, Dr. Martin Jones www.prinformatics.com/course/advanced-python-biologists-apyb03/ 16. July 1st – 5th 2019 BIOACOUSTICS FOR ECOLOGISTS: HARDWARE, SURVEY DESIGN AND DATA ANALYSIS (BIAC01) Glasgow, Scotland, Dr. Paul Howden-Leach https://www.prstatistics.com/course/bioacoustics-for-ecologists-hardware-survey-design-and-data-analysis-biac01/ 17. July 1st – 5th 2019 DATA VISUALISATION AND MANIPULATION USING PYTHON (DVMP01) Glasgow, Scotland, Dr. Martin Jones http://www.prinformatics.com/course/data-visualisation-and-manipulation-using-python-dvmp01/ 18. July 8th – 12th 2019 INTRODUCTION TO BAYESIAN HIERARCHICAL MODELLING USING R (IBHM03) Glasgow, Scotland, Dr. Andrew Parnell https://www.psstatistics.com/course/introduction-to-bayesian-hierarchical-modelling-using-r-ibhm03/ 19. July 29th – August 2nd 2019 INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISPE01) Glasgow, Scotland, Dr. Jakub Nowosad https://www.prstatistics.com/course/introduction-to-spatial-analysis-of-ecological-data-using-r-ispe01/ 20. September 2nd – 6th 2019 APPLIED METHODS FOR ANALYSING CAPTURE-RECAPTURE (MARK-RECAPTURE) DATA USING SPATIALLY EXPLICIT AND NON-SPATIAL TECHNIQUES (MARK01) Glasgow, Scotland, Dr. Joanne Potts, Dr. David Borchers https://www.prstatistics.com/course/applied-methods-for-analysing-capture-recapture-mark-recapture-data-using-spatially-explicit-and-non-spatial-techniques-mark01/ 21. September 16th – 20th 2019 R PACKAGE DESIGN AND DEVELOPMENT AND REPRODUCIBLE DATA SCIENCE FOR BIOLOGISTS (RPKG01) Glasgow, Scotland, Dr. Cory Merow, Dr. Andy Rominger https://www.prstatistics.com/course/r-package-design-and-development-and-reproducible-data-science-for-biologists-rpkg01/ 22. September 30th – October 4th 2019 GEOMETRIC MORPHOMETRICS USING R (GMMR02) Glasgow, Scotland, Prof. Dean Adams, Prof. Michael Collyer, Dr. Antigoni Kaliontzopoulou http://www.prstatistics.com/course/geometric-morphometrics-using-r-gmmr02/ 23. October 7th – 11th 2019 GENERAL ADDITIVE MODELS (GAM) AND MIXED MODELS (GAMM) (GAMM01) Glasgow, Scotland, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/general-additive-models-gam-and-mixed-models-gamm-gamm01/ 24. October 7th – 11th 2019 CONSERVATION PLANNING USING PRIORITIZR : FROM THEORY TO PRACTICE (PRTZ01) Athens, GREECE, Dr Richard Schuster and Nina Morell https://www.prstatistics.com/course/conservation-planning-using-prioritizr-from-theory-to-practice-prtz01/ 25. October 21st – 25th 2019 A COMPLETE GUIDE TO MIXED MODELS (INCLUDING TEMPORAL AND SPATIAL AUTOCORRELATION) (MMTS01) Athens, GREECE, Dr Aristides (Aris) Moustakas https://www.prstatistics.com/course/a-complete-guide-to-mixed-models-including-temporal-and-spatial-autocorrelation-mmts01/ 26. November 11th – 15th 2019 APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME05) Glasgow, Scotland, Dr Matt Denwood, Emma Howard https://www.prstatistics.com/course/applied-bayesian-modelling-for-ecologists-and-epidemiologists-abme05/ 27. November 18th – 22nd 2019 INTRODUCTION TO STRUCTURED POPULATION MODELS AND DEMOGRAPHIC DISTRIBUTION MODELS (IIPM01) Athens, GREECE, Dr Cory Merow https://www.prstatistics.com/course/introduction-to-structured-population-models-and-demographic-distribution-models-iipm01/ 28. November 25th – 29th 2019 ADVANCED RANGE, NICHE, AND DISTRIBUTION MODELING (ASDM01) Athens, GREECE, Dr Cory Merow https://www.prstatistics.com/course/advanced-range-niche-and-distribution-modeling-asdm01/ -- Oliver Hooker PhD. PR statistics 2018 publications - Alternative routes to piscivory: Contrasting growth trajectories in brown trout (Salmo trutta) ecotypes exhibiting contrasting life history strategies. Ecology of Freshwater Fish. Phenotypic and resource use partitioning amongst sympatric lacustrine brown trout, Salmo trutta. Biological Journal of the Linnean Society. DOI 10.1093/biolinnean/bly032 prstatistics.com facebook.com/prstatistics/ twitter.com/PRstatistics groups.google.com/d/forum/pr-statistics-post-course-forum prstatistics.com/organiser/oliver-hooker/ 6 Hope Park Crescent Edinburgh EH8 9NA +44 (0) 7966500340 [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
