Thnaks Liam. The problem is solved. -----Original Message----- From: Saleh Rahimlouye Barabi Sent: 30. september 2019. a. 16:32 To: Liam Revell; R-sig-phylo@r-project.org Subject: RE: [R-sig-phylo] plotting time-calibrated trees
Dear Liam, Yes, It is the best solution. But I'm getting an error with the negative sign of the "by" argument in the following code. Would you please explain it to me? obj<-axis(1,pos=0,at=seq(T,min.tick,by=-tick.spacing),cex.axis=0.5,labels=FALSE) error : wrong sign in 'by' argument Best Regards, Saleh -----Original Message----- From: Liam Revell [mailto:liam.rev...@umb.edu] Sent: 30. september 2019. a. 15:03 To: Saleh Rahimlouye Barabi; R-sig-phylo@r-project.org Subject: Re: [R-sig-phylo] plotting time-calibrated trees Dear Saleh. You can do this using my package phytools or using ape::axisPhylo. I have an example using both options on my blog: http://blog.phytools.org/2018/02/another-technique-for-including-time.html. All the best, Liam Liam J. Revell Associate Professor, University of Massachusetts Boston Profesor Asistente, Universidad Católica de la Ssma Concepción web: http://faculty.umb.edu/liam.revell/, http://www.phytools.org Academic Director UMass Boston Chile Abroad (starting 2019): https://www.umb.edu/academics/caps/international/biology_chile On 9/30/2019 8:46 AM, Saleh Rahimlouye Barabi wrote: > [EXTERNAL SENDER] > > Hello, > > I have constructed a big time-calibrated tree (683 tip labels) using the > ape::chronopl function. What is a good way of visualizing this tree in a > circular way with time scale axis? > > Best, > Saleh Rahimlou > Ph.D. Candidate > Department of Botany and Ecology > University of Tartu > 14A Ravila, 50411 Tartu > Estonia > Email: saleh.rahim...@ut.ee<mailto:saleh.rahim...@ut.ee> > > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat > .ethz.ch%2Fmailman%2Flistinfo%2Fr-sig-phylo&data=02%7C01%7Cliam.re > vell%40umb.edu%7Cceb0491244b3475a361d08d7459bf638%7Cb97188711ee9442595 > 3c1ace1373eb38%7C0%7C1%7C637054408469241957&sdata=KjF9wmmInmu%2FtI > LKWt5Yda65fvPRtKiVGjGkYuLsuA0%3D&reserved=0 > Searchable archive at > https://nam01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.m > ail-archive.com%2Fr-sig-phylo%40r-project.org%2F&data=02%7C01%7Cli > am.revell%40umb.edu%7Cceb0491244b3475a361d08d7459bf638%7Cb97188711ee94 > 425953c1ace1373eb38%7C0%7C1%7C637054408469251946&sdata=Sb1DvrI6ECA > EaMf8rUX56db5NVz7j0be003l31fY9nw%3D&reserved=0 > _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
