Hello,
I'm wondering whether someone knows of an efficient way to extract
intraspecific (within-species) and interspecific (between-species) genetic
distances for each species returned by ape::dist.dna() to be able to
calculate the DNA barcode gap.
It seems extracting the entire object as a matrix is a step in the right
direction.
Consider the following example:
library(ape)
library(spider)
data(anoteropsis) # sample dataset
anoDist <- dist.dna(anoteropsis, model = "raw", pairwise.deletion =
FALSE, as.matrix = TRUE) # compute p-distances
Any ideas?
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