Dear Felipe. Assuming your "multiSimmap" object is called /maps/, you can try something like /summary(maps)$ace/. That should be a matrix with the posterior probabilities from stochastic mapping at all the nodes and tips of the tree.
All the best, Liam Liam J. Revell Professor of Biology, University of Massachusetts Boston Web: http://faculty.umb.edu/liam.revell/ Book: Phylogenetic Comparative Methods in R <https://press.princeton.edu/books/phylogenetic-comparative-methods-in-r> (/Princeton University Press/, 2022) On 8/22/2023 11:22 AM, Felipe Rossetto wrote: > CAUTION: EXTERNAL SENDER > > Dear all, > > I am trying to find an email where Liam showed a command that allows us to > get the posterior probability values of pie charts at nodes of trees > resulting from make.simmap computation, but I failed to find it. Does > someone know this command? If yes, I am very grateful, if it is possible to > share it. > > Thanks in advance > > Felipe > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-phylo mailing list -R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive athttp://www.mail-archive.com/r-sig-phylo@r-project.org/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
