Dear all, I have a large alignment (>3000 species) and a topology and I'd like to estimate branch lengths on that fixed topology using a GTR+G model, but it has been challenging computationally using optim.pml in phangorn. Any ideas about how to speed things up?
Thanks! Karla [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/