Greg-
I tried the build using the last release rdkit-Release_2017_09_3.tar.gz
and everything compiled fine!
So, I'm out of the woods, but don't understand why it failed for the latest
git clone.
I'm satisfied for now, but if you'd like to pursue this and need any input
from me, let me know.
Thanks,
TJ
On Mon, Mar 19, 2018 at 7:21 AM, TJ O'Donnell <t...@acm.org> wrote:
> Thanks for your attention to this.
> Have a good ACS meeting and enjoy New Orleans!
>
> On Mon, Mar 19, 2018 at 7:04 AM, Greg Landrum <greg.land...@gmail.com>
> wrote:
>
>> hmm, I'm stumped.
>> I'm going to have to try to reproduce the problem on a linux box.
>> Since I'm traveling this week (at the ACS in New Orleans), this may take
>> a while.
>>
>> -greg
>>
>>
>> On Mon, Mar 19, 2018 at 8:41 AM, TJ O'Donnell <t...@acm.org> wrote:
>>
>>> I grep'd with a slight mod to your suggestion and got these few lines.
>>> There are many others with all lower case boost_thread and boost_serial
>>>
>>> tj@vmmint:~/RDKit/rdkit/build$ grep Boost_SERIAL CMakeCache.txt
>>> Boost_SERIALIZATION_LIBRARY_DEBUG:FILEPATH=/usr/lib/x86_64-l
>>> inux-gnu/libboost_serialization.so
>>> Boost_SERIALIZATION_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64
>>> -linux-gnu/libboost_serialization.so
>>> //ADVANCED property for variable: Boost_SERIALIZATION_LIBRARY_DEBUG
>>> Boost_SERIALIZATION_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
>>> //ADVANCED property for variable: Boost_SERIALIZATION_LIBRARY_RELEASE
>>> Boost_SERIALIZATION_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
>>>
>>> tj@vmmint:~/RDKit/rdkit/build$ grep Boost_THREAD CMakeCache.txt
>>> Boost_THREAD_LIBRARY_DEBUG:FILEPATH=/usr/lib/x86_64-linux-gn
>>> u/libboost_thread.so
>>> Boost_THREAD_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-
>>> gnu/libboost_thread.so
>>> //ADVANCED property for variable: Boost_THREAD_LIBRARY_DEBUG
>>> Boost_THREAD_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
>>> //ADVANCED property for variable: Boost_THREAD_LIBRARY_RELEASE
>>> Boost_THREAD_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
>>>
>>> The case-insensitive search has lines like this and many more:
>>>
>>> tj@vmmint:~/RDKit/rdkit/build$ grep -i boost_SERIAL CMakeCache.txt
>>> rdqueries_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeom
>>> etryLib;general;DataStructs;general;RDGeneral;general;RDBoos
>>> t;general;/usr/lib/x86_64-linux-gnu/libpython2.7.so;gene
>>> ral;/usr/lib/x86_64-linux-gnu/libboost_python.so;general;/
>>> usr/lib/x86_64-linux-gnu/libboost_thread.so;general;/
>>> usr/lib/x86_64-linux-gnu/libboost_system.so;general;/usr/
>>> lib/x86_64-linux-gnu/libpthread.so;general;/usr/lib/x86_64-
>>> linux-gnu/libboost_serialization.so;
>>> rdtrajectory_LIB_DEPENDS:STATIC=general;Trajectory;general;R
>>> DGeometryLib;general;RDGeneral;general;GraphMol;general;/usr
>>> /lib/x86_64-linux-gnu/libpython2.7.so;general;/usr/lib/x86_
>>> 64-linux-gnu/libboost_python.so;general;/usr/lib/x86_64-
>>> linux-gnu/libboost_thread.so;general;/usr/lib/x86_64-linux-
>>> gnu/libboost_system.so;general;/usr/lib/x86_64-linux-
>>> gnu/libpthread.so;general;/usr/lib/x86_64-linux-gnu/
>>> libboost_serialization.so;
>>>
>>>
>>>
>>>
>>> On Mon, Mar 19, 2018 at 3:27 AM, Greg Landrum <greg.land...@gmail.com>
>>> wrote:
>>>
>>>> Well, I don't see anything obvious there to explain why the
>>>> serialization library is being treated differently from the others.
>>>>
>>>> Could you please look at (and send) the output of;
>>>> grep boost_THREAD CMakeCache.txt
>>>> grep boost_SERIAL CMakeCache.txt
>>>>
>>>> Best,
>>>> -greg
>>>>
>>>>
>>>>
>>>> On Sun, Mar 18, 2018 at 10:31 PM, TJ O'Donnell <t...@acm.org> wrote:
>>>>
>>>>> FYI I cloned https://github.com/rdkit/rdkit.git
>>>>> and get the same error
>>>>>
>>>>> TJ
>>>>>
>>>>> On Sun, Mar 18, 2018 at 7:31 PM, TJ O'Donnell <t...@acm.org> wrote:
>>>>>
>>>>>> Thanks for the quick reply, Greg. I just did a git pull and it
>>>>>> merged in lots of files.
>>>>>> I may try a clone to a "fresh" folder and see how that goes.
>>>>>> Anyway, here's the output from VERBOSE=1 make FilterCatalog
>>>>>>
>>>>>> tj@vmmint:~/RDKit/rdkit/build$ VERBOSE=1 make FilterCatalog
>>>>>> /usr/bin/cmake -H/home/tj/RDKit/rdkit -B/home/tj/RDKit/rdkit/build
>>>>>> --check-build-system CMakeFiles/Makefile.cmake 0
>>>>>> make -f CMakeFiles/Makefile2 FilterCatalog
>>>>>> make[1]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -H/home/tj/RDKit/rdkit -B/home/tj/RDKit/rdkit/build
>>>>>> --check-build-system CMakeFiles/Makefile.cmake 0
>>>>>> /usr/bin/cmake -E cmake_progress_start
>>>>>> /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>>> 9
>>>>>> make -f CMakeFiles/Makefile2 Code/GraphMol/FilterCatalog/CM
>>>>>> akeFiles/FilterCatalog.dir/all
>>>>>> make[2]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make
>>>>>> Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/RDGeneral
>>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/RDGeneral
>>>>>> /home/tj/RDKit/rdkit/build/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake
>>>>>> --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make
>>>>>> Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[3]: Nothing to be done for `Code/RDGeneral/CMakeFiles/RDG
>>>>>> eneral.dir/build'.
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -E cmake_progress_report
>>>>>> /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>>> 64
>>>>>> [ 11%] Built target RDGeneral
>>>>>> make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make
>>>>>> Code/DataStructs/CMakeFiles/DataStructs.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit
>>>>>> /home/tj/RDKit/rdkit/Code/DataStructs
>>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/DataStructs
>>>>>> /home/tj/RDKit/rdkit/build/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake
>>>>>> --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make
>>>>>> Code/DataStructs/CMakeFiles/DataStructs.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[3]: Nothing to be done for `Code/DataStructs/CMakeFiles/D
>>>>>> ataStructs.dir/build'.
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -E cmake_progress_report
>>>>>> /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>>> 7
>>>>>> [ 22%] Built target DataStructs
>>>>>> make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make
>>>>>> Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/Geometry
>>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/Geometry
>>>>>> /home/tj/RDKit/rdkit/build/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake
>>>>>> --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make
>>>>>> Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[3]: Nothing to be done for `Code/Geometry/CMakeFiles/RDGe
>>>>>> ometryLib.dir/build'.
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -E cmake_progress_report
>>>>>> /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>>> 66
>>>>>> [ 33%] Built target RDGeometryLib
>>>>>> make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make
>>>>>> Code/GraphMol/CMakeFiles/GraphMol.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/GraphMol
>>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/GraphMol
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake
>>>>>> --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make
>>>>>> Code/GraphMol/CMakeFiles/GraphMol.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[3]: Nothing to be done for `Code/GraphMol/CMakeFiles/Grap
>>>>>> hMol.dir/build'.
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -E cmake_progress_report
>>>>>> /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>>> 35 36 37 38
>>>>>> [ 77%] Built target GraphMol
>>>>>> make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make
>>>>>> Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit
>>>>>> /home/tj/RDKit/rdkit/Code/GraphMol/Subgraphs
>>>>>> /home/tj/RDKit/rdkit/build
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/Subgraphs
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/Subgraphs/CMakeFile
>>>>>> s/Subgraphs.dir/DependInfo.cmake --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make
>>>>>> Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[3]: Nothing to be done for `Code/GraphMol/Subgraphs/CMake
>>>>>> Files/Subgraphs.dir/build'.
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMa
>>>>>> keFiles
>>>>>> [ 77%] Built target Subgraphs
>>>>>> make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make
>>>>>> Code/Catalogs/CMakeFiles/Catalogs.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/Catalogs
>>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/Catalogs
>>>>>> /home/tj/RDKit/rdkit/build/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake
>>>>>> --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make
>>>>>> Code/Catalogs/CMakeFiles/Catalogs.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[3]: Nothing to be done for `Code/Catalogs/CMakeFiles/Cata
>>>>>> logs.dir/build'.
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMa
>>>>>> keFiles
>>>>>> [ 77%] Built target Catalogs
>>>>>> make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make
>>>>>> Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit
>>>>>> /home/tj/RDKit/rdkit/Code/GraphMol/SmilesParse
>>>>>> /home/tj/RDKit/rdkit/build
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/SmilesParse
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/SmilesParse/CMakeFi
>>>>>> les/SmilesParse.dir/DependInfo.cmake --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make
>>>>>> Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[3]: Nothing to be done for `Code/GraphMol/SmilesParse/CMa
>>>>>> keFiles/SmilesParse.dir/build'.
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -E cmake_progress_report
>>>>>> /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>>> 71
>>>>>> [ 88%] Built target SmilesParse
>>>>>> make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make
>>>>>> Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit
>>>>>> /home/tj/RDKit/rdkit/Code/GraphMol/Substruct
>>>>>> /home/tj/RDKit/rdkit/build
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/Substruct
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/Substruct/CMakeFile
>>>>>> s/SubstructMatch.dir/DependInfo.cmake --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make
>>>>>> Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[3]: Nothing to be done for `Code/GraphMol/Substruct/CMake
>>>>>> Files/SubstructMatch.dir/build'.
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMa
>>>>>> keFiles
>>>>>> [ 88%] Built target SubstructMatch
>>>>>> make -f
>>>>>> Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make
>>>>>> Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends
>>>>>> "Unix Makefiles" /home/tj/RDKit/rdkit
>>>>>> /home/tj/RDKit/rdkit/Code/GraphMol/FilterCatalog
>>>>>> /home/tj/RDKit/rdkit/build
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/FilterCatalog
>>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/FilterCatalog/CMake
>>>>>> Files/FilterCatalog.dir/DependInfo.cmake --color=
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make -f
>>>>>> Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make
>>>>>> Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
>>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>>> Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
>>>>>> cd /home/tj/RDKit/rdkit/build/Code/GraphMol/FilterCatalog &&
>>>>>> /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt
>>>>>> --verbose=1
>>>>>> /usr/bin/c++ -fPIC -mpopcnt -Wno-deprecated -Wno-unused-function
>>>>>> -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG -shared
>>>>>> -Wl,-soname,libRDKitFilterCatalog.so.1 -o
>>>>>> ../../../lib/libRDKitFilterCatalog.so.1.2018.03.1.dev1
>>>>>> CMakeFiles/FilterCatalog.dir/Filters.cpp.o
>>>>>> CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
>>>>>> CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
>>>>>> CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
>>>>>> CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
>>>>>> ../../../lib/libRDKitSubgraphs.so.1.2018.03.1.dev1
>>>>>> ../../../lib/libRDKitSubstructMatch.so.1.2018.03.1.dev1
>>>>>> ../../../lib/libRDKitSmilesParse.so.1.2018.03.1.dev1
>>>>>> ../../../lib/libRDKitGraphMol.so.1.2018.03.1.dev1
>>>>>> ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.1.dev1
>>>>>> ../../../lib/libRDKitCatalogs.so.1.2018.03.1.dev1
>>>>>> ../../../lib/libRDKitRDGeneral.so.1.2018.03.1.dev1
>>>>>> -lBoost::serialization
>>>>>> ../../../lib/libRDKitDataStructs.so.1.2018.03.1.dev1
>>>>>> ../../../lib/libRDKitRDGeneral.so.1.2018.03.1.dev1 -lboost_thread
>>>>>> -lboost_system -lpthread -Wl,-rpath,/home/tj/RDKit/rdkit/build/lib:
>>>>>> /usr/bin/ld: cannot find -lBoost::serialization
>>>>>> collect2: error: ld returned 1 exit status
>>>>>> make[3]: *** [lib/libRDKitFilterCatalog.so.1.2018.03.1.dev1] Error 1
>>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[2]: *** [Code/GraphMol/FilterCatalog/C
>>>>>> MakeFiles/FilterCatalog.dir/all] Error 2
>>>>>> make[2]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make[1]: *** [Code/GraphMol/FilterCatalog/C
>>>>>> MakeFiles/FilterCatalog.dir/rule] Error 2
>>>>>> make[1]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>>> make: *** [FilterCatalog] Error 2
>>>>>>
>>>>>> On Sun, Mar 18, 2018 at 3:48 PM, Greg Landrum <greg.land...@gmail.com
>>>>>> > wrote:
>>>>>>
>>>>>>> Hi TJ,
>>>>>>>
>>>>>>> Hrm, that's ugly. Just to confirm: Are you building the master
>>>>>>> branch from github?
>>>>>>> It looks like there's no fundamental problem with master; at least
>>>>>>> the travis builds pass: https://travis-ci.org/rdkit/rdkit
>>>>>>>
>>>>>>> To help track this down, can you please send the results of doing:
>>>>>>> VERBOSE=1 make FilterCatalog
>>>>>>>
>>>>>>> Best,
>>>>>>> -greg
>>>>>>>
>>>>>>>
>>>>>>> On Sun, Mar 18, 2018 at 11:27 PM, TJ O'Donnell <t...@acm.org> wrote:
>>>>>>>
>>>>>>>> I'm trying to build rdkit from the latest git source.
>>>>>>>> Linux Mint 17
>>>>>>>>
>>>>>>>> I get this error
>>>>>>>> [ 57%] Building CXX object Code/GraphMol/FilterCatalog/CM
>>>>>>>> akeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
>>>>>>>> Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
>>>>>>>> /usr/bin/ld: cannot find -lBoost::serialization
>>>>>>>> collect2: error: ld returned 1 exit status
>>>>>>>> make[2]: *** [lib/libRDKitFilterCatalog.so.1.2018.03.1.dev1] Error
>>>>>>>> 1
>>>>>>>> make[1]: *** [Code/GraphMol/FilterCatalog/C
>>>>>>>> MakeFiles/FilterCatalog.dir/all] Error 2
>>>>>>>> make: *** [all] Error 2
>>>>>>>>
>>>>>>>> but cmake seemed to find this lib OK
>>>>>>>> cmake .. -DRDK_BUILD_INCHI_SUPPORT=ON
>>>>>>>> -- The C compiler identification is GNU 4.8.4
>>>>>>>> -- The CXX compiler identification is GNU 4.8.4
>>>>>>>> ....
>>>>>>>> -- Found Threads: TRUE
>>>>>>>> -- Boost version: 1.54.0
>>>>>>>> -- Found the following Boost libraries:
>>>>>>>> -- thread
>>>>>>>> -- system
>>>>>>>> -- Boost version: 1.54.0
>>>>>>>> -- Found the following Boost libraries:
>>>>>>>> -- serialization
>>>>>>>> == Using strict rotor definition
>>>>>>>> == Updating Filters.cpp from pains file
>>>>>>>>
>>>>>>>> Can you help me figure out how to get past this?
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> TJ
>>>>>>>>
>>>>>>>> ------------------------------------------------------------
>>>>>>>> ------------------
>>>>>>>> Check out the vibrant tech community on one of the world's most
>>>>>>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>>>>>>>> _______________________________________________
>>>>>>>> Rdkit-devel mailing list
>>>>>>>> Rdkit-devel@lists.sourceforge.net
>>>>>>>> https://lists.sourceforge.net/lists/listinfo/rdkit-devel
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
Rdkit-devel mailing list
Rdkit-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rdkit-devel
