Thanks for the additional information Marshall.
After a bit of poking around, it looks like it's a compiler bug that
can possibly be worked around:
http://mail.python.org/pipermail/cplusplus-sig/2008-April/013116.html
Please try adding:
<toolset>gcc:<cflags>-DBOOST_PYTHON_NO_PY_SIGNATURES
to $RDBASE/Code/Jamroot
So you'd have something like this:
project RDKit
: requirements <include>. <threading>multi
<include>$(BOOSTHOME)
<include>$(RDBASE)/External/Lapack++/include
<include>$(RDBASE)/External/vflib-2.0/include
<toolset>gcc:<cflags>-Wno-unused-function
<toolset>darwin:<cflags>-Wno-unused-function
<toolset>gcc:<cflags>-fno-strict-aliasing
<toolset>msvc:<define>WIN32
<target-os>windows:<include>c:/Python25/lib/site-packages/numpy/core/include
<toolset>gcc:<include>/usr/lib/python2.5/site-packages/numpy/core/include
<toolset>gcc:<cflags>-DBOOST_PYTHON_NO_PY_SIGNATURES
<toolset>darwin:<include>/System/Library/Frameworks/Python.framework/Versions/2.5/Extras/lib/python/numpy/core/include
<address-model>64:<cflags>-fPIC
# <define>RDK_USELAPACKPP #<- uncomment this to use lapack++
<target-os>windows:<define>BOOST_NUMERIC_BINDINGS_USE_CLAPACK
<toolset>msvc:<define>_CRT_SECURE_NO_DEPRECATE
: default-build release ;
On Thu, Jan 15, 2009 at 12:43 AM, Marshall Levesque <marsh...@gmail.com> wrote:
> I'm away from the office so I'm answering this from my Gmail account.
>
> I attempted an install on Fedora release 8 (Werewolf).
>
> Attached is the output from 'yum list installed'
>
> Thanks for your help.
>
> -Marshall
>
>
>
> *Subject: **Re: [Rdkit-discuss] Build Error: GraphMol/Wrap/EditableMol.o*
>
> Dear Marshall,
>
> On Wed, Jan 14, 2009 at 1:29 AM, Marshall Levesque
> <marsh...@emolecules.com <mailto:marsh...@emolecules.com>> wrote:
>
>
> /home/marshall/boost_1_37_0/boost/type_traits/detail/cv_traits_impl.hpp:37:
>
> internal compiler error: in make_rtl_for_nonlocal_decl, at cp/decl.c:5067
> Please submit a full bug report,
>
>
> Since this seems to be a compiler problem while building the python
> wrapper for molecules, I'd like to gather a bit more information. From
> the other text in your email message I can see that you're running g++
> v4.1.2; which linux distribution are you using?
>
> -greg
>
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