Hi All I have some problem with drawing. When I draw molecules using RDkit sometimes I have some structure overlap. But when I draw it using for example marvin it's look fine.
There is some example code:
from rdkit import Chem
from rdkit.Chem import Draw
mol = Chem.MolFromSmiles('CC(=O)Nc1ccccc1C(=O)C1CCCC1C1CCCCC1')
Draw.MolToFile(mol,'test.png')
In attachment I added example image.
I'm using Ubuntu 12.04 x64.
Is there any solution?
<<attachment: test.png>>
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