Dear all. I have some questions about Pharmacophore. I want to align molecules that from SDF files, by Pharmacophore. At first, I set Pharmacophore by using "EmbedPharmacophore()" method. And checked molecules by "EmbedPharmacophore()" method. Then, generated 3D structures by "EmbedPharmacophore()" method. Finally, I want to align these conformers to the Pharmacophore. Could anyone give me a small example? Thanks.
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