Hi,
I am currently attempting to install RDKit after a (forced)
re-installation of windows 7.
I decided to use Anaconda Python and to get RDKit using the conda
installer :
C:\Users\jmn>conda create -y -c https://conda.anaconda.org/rdkit -n
my-rdkit-env rdkit > rdkit_log.txt 2>&1
The -y flag was added in order to perform a non-interactive (silent)
installation.
Download was OK. Installation was not.
The edited version of the rdkit_log.txt file (attached) reflects the
messages in the console window
when conda is used in interactive mode.
It seems that this "lock" problem has to do with conda but not with RDKit.
Has someone already experienced such a problem, and possibly
found a workaround?
Best regards,
Jean-Marc
PS. Sorry for the preceding empty message.
--
Jean-Marc Nuzillard
Institut de Chimie Moléculaire de Reims
CNRS UMR 7312
Moulin de la Housse
CPCBAI, Bâtiment 18
BP 1039
51687 REIMS Cedex 2
France
Tel : 03 26 91 82 10
Fax : 03 26 91 31 66
http://www.univ-reims.fr/ICMR
http://www.univ-reims.fr/LSD/
http://www.univ-reims.fr/LSD/JmnSoft/
Fetching package metadata ...........
Solving package specifications: ..........
Package plan for installation in environment
C:\Users\jmn\.conda\envs\my-rdkit-env:
The following packages will be downloaded:
package | build
---------------------------|-----------------
boost-1.56.0 | py27_3 8.5 MB rdkit
numpy-1.11.2 | py27_0 3.0 MB
pip-9.0.1 | py27_0 1.6 MB
rdkit-2016.03.1 | np111py27_1 43.8 MB rdkit
------------------------------------------------------------
Total: 56.9 MB
The following NEW packages will be INSTALLED:
boost: 1.56.0-py27_3 rdkit
bzip2: 1.0.6-vc9_3 [vc9] (copy)
mkl: 11.3.3-1 (copy)
numpy: 1.11.2-py27_0
pip: 9.0.1-py27_0
python: 2.7.12-0 (copy)
rdkit: 2016.03.1-np111py27_1 rdkit
setuptools: 27.2.0-py27_1 (copy)
vs2008_runtime: 9.00.30729.1-2 (copy)
wheel: 0.29.0-py27_0 (copy)
zlib: 1.2.8-vc9_3 [vc9] (copy)
Fetching packages ...
boost-1.56.0-p 100% |###############################| Time: 0:00:05 1.48 MB/s
numpy-1.11.2-p 100% |###############################| Time: 0:00:00 4.53 MB/s
pip-9.0.1-py27 100% |###############################| Time: 0:00:00 2.73 MB/s
rdkit-2016.03. 100% |###############################| Time: 0:00:25 1.78 MB/s
Extracting packages ...
WARNING conda.lock:touch(53): Failed to create lock, do not run conda in
parallel processes [errno 13]
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : win-64
conda version : 4.2.9
conda is private : False
conda-env version : 4.2.9
conda-build version : 2.0.2
python version : 2.7.12.final.0
requests version : 2.11.1
root environment : C:\Program Files\Anaconda2 (read only)
default environment : C:\Program Files\Anaconda2
envs directories : C:\Users\jmn\.conda\envs
C:\Program Files\Anaconda2\envs
package cache : C:\Users\jmn\.conda\envs\.pkgs
C:\Program Files\Anaconda2\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64/
https://repo.continuum.io/pkgs/free/noarch/
https://repo.continuum.io/pkgs/pro/win-64/
https://repo.continuum.io/pkgs/pro/noarch/
https://repo.continuum.io/pkgs/msys2/win-64/
https://repo.continuum.io/pkgs/msys2/noarch/
config file : None
offline mode : False
`$ C:\Program Files\Anaconda2\Scripts\conda-script.py create -y -c
https://conda.anaconda.org/rdkit -n my-rdkit-env rdkit`
Traceback (most recent call last):
File "C:\Program Files\Anaconda2\Scripts\conda-script.py", line 5, in <module>
sys.exit(conda.cli.main())
File "C:\Program Files\Anaconda2\lib\site-packages\conda\cli\main.py", line
150, in main
return conda_exception_handler(_main)
File "C:\Program Files\Anaconda2\lib\site-packages\conda\exceptions.py", line
491, in conda_exception_handler
print_unexpected_error_message(e)
File "C:\Program Files\Anaconda2\lib\site-packages\conda\exceptions.py", line
441, in print_unexpected_error_message
stderrlogger.info('\n'.join(' ' + line for line in
traceback.splitlines()))
File "C:\Program Files\Anaconda2\lib\site-packages\conda\exceptions.py", line
441, in <genexpr>
stderrlogger.info('\n'.join(' ' + line for line in
traceback.splitlines()))
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe8 in position 27:
ordinal not in range(128)
------------------------------------------------------------------------------
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