Hello,
Further to my little exploratoin, I managed to do a few things: conda update conda conda update -n root conda-build so I've got a little further, but I've run into a Windows nightmare - path files are too long. I can see the file in the cache: boost_1_59_0.zip, but the name is so long windows will not open it. Has anyone done a build in Windows10, can you please send me your build routine? Thanks, mike conda build boost BUILD START: boost-1.59.0-py35_3 updating index in: C:\Program Files\Anaconda3\conda-bld\win-64 updating index in: C:\Program Files\Anaconda3\conda-bld\noarch The following NEW packages will be INSTALLED: bzip2: 1.0.6-vc14_3 [vc14] pip: 9.0.1-py35_0 python: 3.5.2-0 setuptools: 27.2.0-py35_1 vs2015_runtime: 14.0.25123-0 wheel: 0.29.0-py35_0 zlib: 1.2.8-vc14_3 [vc14] Source cache directory is: C:\Program Files\Anaconda3\conda-bld\src_cache Found source in cache: boost_1_59_0.zip Extracting download Traceback (most recent call last): File "C:\Program Files\Anaconda3\Scripts\conda-build-script.py", line 5, in <module> sys.exit(conda_build.cli.main_build.main()) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 244, in main execute(sys.argv[1:]) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 236, in execute already_built=None, config=config, noverify=args.no_verify) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\api.py", line 75, in build need_source_download=need_source_download, config=config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", line 1227, in build_tree config=recipe_config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", line 790, in build config=config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\render.py", line 86, in parse_or_try_download source.provide(metadata.path, metadata.get_section('source'), config=config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\source.py", line 485, in provide unpack(meta, config=config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\source.py", line 86, in unpack unzip(src_path, config.work_dir) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\utils.py", line 287, in unzip with open(path, 'wb') as fo: FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Program Files\\Anaconda3\\conda-bld\\boost_1480420542489\\work\\boost_1_59_0\\libs\\ geometry\\doc\\html\\geometry\\reference\\spatial_indexes\\boost__geometry__ index__rtree\\rtree_parameters_type_const____indexable_getter_const____value _equal_const____allocator_type_const___.html' From: Mike Mazanetz [mailto:mi...@novadatasolutions.co.uk] Sent: 29 November 2016 11:13 To: rdkit-discuss@lists.sourceforge.net Subject: [Rdkit-discuss] errors with windows10 RDKit installation using conda Hello RDKit Forum, I've been using RDkit to several years through KNIME and have found it thoroughly useful. I've taken the next step and decided to try the Postgres Cartridge, but I've had issues building RDKit on Windows. Has anyone encountered had success using Anaconda3 to build RDKit? I get this message - which I've not found sufficient answers for from the conda github: Directory of C:\NovaData\Software\RDKit\conda-rdkit-master 28/11/2016 20:48 <DIR> . 28/11/2016 20:48 <DIR> .. 28/11/2016 05:45 3 .gitignore 28/11/2016 05:45 <DIR> boost 28/11/2016 05:45 <DIR> cairocffi 28/11/2016 05:45 <DIR> cairo_nox 28/11/2016 05:45 <DIR> django-rdkit 28/11/2016 05:45 2,626 Dockerfile 28/11/2016 05:45 <DIR> eigen 28/11/2016 05:45 <DIR> ncurses 28/11/2016 05:45 <DIR> nox 28/11/2016 05:45 <DIR> pixman 28/11/2016 05:45 <DIR> postgresql 28/11/2016 05:45 <DIR> postgresql95 28/11/2016 05:45 <DIR> rdkit 28/11/2016 05:45 <DIR> rdkit-postgresql 28/11/2016 05:45 <DIR> rdkit-postgresql95 28/11/2016 05:45 6,626 README.rst 3 File(s) 9,255 bytes 15 Dir(s) 360,784,285,696 bytes free C:\NovaData\Software\RDKit\conda-rdkit-master>conda build boost BUILD START: boost-1.59.0-py35_3 updating index in: C:\Users\NovaData\conda-bld\win-64 updating index in: C:\Users\NovaData\conda-bld\noarch The following packages will be downloaded: package | build ---------------------------|----------------- pip-9.0.1 | py35_0 1.7 MB The following NEW packages will be INSTALLED: bzip2: 1.0.6-vc14_3 [vc14] (copy) pip: 9.0.1-py35_0 python: 3.5.2-0 (copy) setuptools: 27.2.0-py35_1 (copy) vs2015_runtime: 14.0.25123-0 (copy) wheel: 0.29.0-py35_0 (copy) zlib: 1.2.8-vc14_3 [vc14] (copy) WARNING conda.lock:touch(53): Failed to create lock, do not run conda in parallel processes [errno 13] Traceback (most recent call last): File "C:\Program Files\Anaconda3\Scripts\conda-build-script.py", line 5, in <module> sys.exit(conda_build.cli.main_build.main()) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 246, in main execute(sys.argv[1:]) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 238, in execute already_built=None, config=config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\api.py", line 83, in build need_source_download=need_source_download, config=config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", line 1004, in build_tree config=recipe_config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", line 561, in build create_env(config.build_prefix, specs, config=config) File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", line 431, in create_env plan.execute_actions(actions, index, verbose=config.debug) File "C:\Program Files\Anaconda3\lib\site-packages\conda\plan.py", line 643, in execute_actions inst.execute_instructions(plan, index, verbose) File "C:\Program Files\Anaconda3\lib\site-packages\conda\instructions.py", line 134, in execute_instructions cmd(state, arg) File "C:\Program Files\Anaconda3\lib\site-packages\conda\instructions.py", line 58, in EXTRACT_CMD extract(arg) File "C:\Program Files\Anaconda3\lib\site-packages\conda\install.py", line 801, in extract t.extractall(path=temp_path) File "C:\Program Files\Anaconda3\lib\tarfile.py", line 1996, in extractall numeric_owner=numeric_owner) File "C:\Program Files\Anaconda3\lib\tarfile.py", line 2038, in extract numeric_owner=numeric_owner) File "C:\Program Files\Anaconda3\lib\tarfile.py", line 2100, in _extract_member os.makedirs(upperdirs) File "C:\Program Files\Anaconda3\lib\os.py", line 231, in makedirs makedirs(head, mode, exist_ok) File "C:\Program Files\Anaconda3\lib\os.py", line 241, in makedirs mkdir(name, mode) PermissionError: [WinError 5] Access is denied: 'C:\\Program Files\\Anaconda3\\pkgs\\vs2015_runtime-14.0.25123-0.tmp' I'm using Anaconda3 on Windows 10. Thanks for your help ! ./mike
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