Mike, It looks like you need to run: conda clean --lock
And perhaps conda build purge http://conda.pydata.org/docs/commands/conda-clean.html The unix version nicely tells you this when this failure happens :) ---- Brian Kelley > On Nov 29, 2016, at 8:11 AM, Mike Mazanetz <mi...@novadatasolutions.co.uk> > wrote: > > Hi, > > Thought I’d update my progress: > > Steps to fix issue: > change Admin permissions for Anaconda3 > ran these commands: > conda update conda > conda update -n root conda-build > conda install -c rdkit rdkit=2016.09.2 > > as RDKit it was change in the last 24 hours J > > then found that this filename was too long, so just deleted it ! > C:\boost_1_59_0.zip\boost_1_59_0\libs\geometry\doc\html\geometry\reference\spatial_indexes\boost__geometry__index__rtree\rtree_parameters_type_const___****.html > > That fixed that problem. > > then had to rename this file as it was named incorrectly in two places. – > probably didn’t need this file anyway ! > Appendix A An Introduction to Preprocessor Metaprogramming.html > > got a little further down the road then encountered this: > File not found - boost_*-mt-1_*.lib > 0 File(s) copied > File not found - boost_*-mt-1_*.dll > 0 File(s) copied > Command failed: cmd.exe /c bld.bat > > So battling these issues now… > > ./mike > > From: Mike Mazanetz [mailto:mi...@novadatasolutions.co.uk] > Sent: 29 November 2016 12:33 > To: rdkit-discuss@lists.sourceforge.net > Subject: Re: [Rdkit-discuss] errors with windows10 RDKit installation using > conda > > Hello, > > Further to my little exploratoin, I managed to do a few things: > conda update conda > conda update -n root conda-build > > so I’ve got a little further, but I’ve run into a Windows nightmare – path > files are too long… I can see the file in the cache: boost_1_59_0.zip, but > the name is so long windows will not open it. > > Has anyone done a build in Windows10, can you please send me your build > routine? > > Thanks, > mike > > > conda build boost > BUILD START: boost-1.59.0-py35_3 > updating index in: C:\Program Files\Anaconda3\conda-bld\win-64 > updating index in: C:\Program Files\Anaconda3\conda-bld\noarch > > The following NEW packages will be INSTALLED: > > bzip2: 1.0.6-vc14_3 [vc14] > pip: 9.0.1-py35_0 > python: 3.5.2-0 > setuptools: 27.2.0-py35_1 > vs2015_runtime: 14.0.25123-0 > wheel: 0.29.0-py35_0 > zlib: 1.2.8-vc14_3 [vc14] > > Source cache directory is: C:\Program Files\Anaconda3\conda-bld\src_cache > Found source in cache: boost_1_59_0.zip > Extracting download > Traceback (most recent call last): > File "C:\Program Files\Anaconda3\Scripts\conda-build-script.py", line 5, in > <module> > sys.exit(conda_build.cli.main_build.main()) > File "C:\Program > Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 244, > in main > execute(sys.argv[1:]) > File "C:\Program > Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 236, > in execute > already_built=None, config=config, noverify=args.no_verify) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\api.py", > line 75, in build > need_source_download=need_source_download, config=config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", > line 1227, in build_tree > config=recipe_config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", > line 790, in build > config=config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\render.py", > line 86, in parse_or_try_download > source.provide(metadata.path, metadata.get_section('source'), > config=config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\source.py", > line 485, in provide > unpack(meta, config=config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\source.py", > line 86, in unpack > unzip(src_path, config.work_dir) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\utils.py", > line 287, in unzip > with open(path, 'wb') as fo: > FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Program > Files\\Anaconda3\\conda-bld\\boost_1480420542489\\work\\boost_1_59_0\\libs\\geometry\\doc\\html\\geometry\\reference\\spatial_indexes\\boost__geometry__index__rtree\\rtree_parameters_type_const____indexable_getter_const____value_equal_const____allocator_type_const___.html' > > > From: Mike Mazanetz [mailto:mi...@novadatasolutions.co.uk] > Sent: 29 November 2016 11:13 > To: rdkit-discuss@lists.sourceforge.net > Subject: [Rdkit-discuss] errors with windows10 RDKit installation using conda > > Hello RDKit Forum, > > I’ve been using RDkit to several years through KNIME and have found it > thoroughly useful. I’ve taken the next step and decided to try the Postgres > Cartridge, but I’ve had issues building RDKit on Windows. > Has anyone encountered had success using Anaconda3 to build RDKit? I get > this message – which I’ve not found sufficient answers for from the conda > github: > > Directory of C:\NovaData\Software\RDKit\conda-rdkit-master > > 28/11/2016 20:48 <DIR> . > 28/11/2016 20:48 <DIR> .. > 28/11/2016 05:45 3 .gitignore > 28/11/2016 05:45 <DIR> boost > 28/11/2016 05:45 <DIR> cairocffi > 28/11/2016 05:45 <DIR> cairo_nox > 28/11/2016 05:45 <DIR> django-rdkit > 28/11/2016 05:45 2,626 Dockerfile > 28/11/2016 05:45 <DIR> eigen > 28/11/2016 05:45 <DIR> ncurses > 28/11/2016 05:45 <DIR> nox > 28/11/2016 05:45 <DIR> pixman > 28/11/2016 05:45 <DIR> postgresql > 28/11/2016 05:45 <DIR> postgresql95 > 28/11/2016 05:45 <DIR> rdkit > 28/11/2016 05:45 <DIR> rdkit-postgresql > 28/11/2016 05:45 <DIR> rdkit-postgresql95 > 28/11/2016 05:45 6,626 README.rst > 3 File(s) 9,255 bytes > 15 Dir(s) 360,784,285,696 bytes free > > C:\NovaData\Software\RDKit\conda-rdkit-master>conda build boost > BUILD START: boost-1.59.0-py35_3 > updating index in: C:\Users\NovaData\conda-bld\win-64 > updating index in: C:\Users\NovaData\conda-bld\noarch > > The following packages will be downloaded: > > package | build > ---------------------------|----------------- > pip-9.0.1 | py35_0 1.7 MB > > The following NEW packages will be INSTALLED: > > bzip2: 1.0.6-vc14_3 [vc14] (copy) > pip: 9.0.1-py35_0 > python: 3.5.2-0 (copy) > setuptools: 27.2.0-py35_1 (copy) > vs2015_runtime: 14.0.25123-0 (copy) > wheel: 0.29.0-py35_0 (copy) > zlib: 1.2.8-vc14_3 [vc14] (copy) > > WARNING conda.lock:touch(53): Failed to create lock, do not run conda in > parallel processes [errno 13] > Traceback (most recent call last): > File "C:\Program Files\Anaconda3\Scripts\conda-build-script.py", line 5, in > <module> > sys.exit(conda_build.cli.main_build.main()) > File "C:\Program > Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 246, > in main > execute(sys.argv[1:]) > File "C:\Program > Files\Anaconda3\lib\site-packages\conda_build\cli\main_build.py", line 238, > in execute > already_built=None, config=config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\api.py", > line 83, in build > need_source_download=need_source_download, config=config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", > line 1004, in build_tree > config=recipe_config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", > line 561, in build > create_env(config.build_prefix, specs, config=config) > File "C:\Program Files\Anaconda3\lib\site-packages\conda_build\build.py", > line 431, in create_env > plan.execute_actions(actions, index, verbose=config.debug) > File "C:\Program Files\Anaconda3\lib\site-packages\conda\plan.py", line > 643, in execute_actions > inst.execute_instructions(plan, index, verbose) > File "C:\Program Files\Anaconda3\lib\site-packages\conda\instructions.py", > line 134, in execute_instructions > cmd(state, arg) > File "C:\Program Files\Anaconda3\lib\site-packages\conda\instructions.py", > line 58, in EXTRACT_CMD > extract(arg) > File "C:\Program Files\Anaconda3\lib\site-packages\conda\install.py", line > 801, in extract > t.extractall(path=temp_path) > File "C:\Program Files\Anaconda3\lib\tarfile.py", line 1996, in extractall > numeric_owner=numeric_owner) > File "C:\Program Files\Anaconda3\lib\tarfile.py", line 2038, in extract > numeric_owner=numeric_owner) > File "C:\Program Files\Anaconda3\lib\tarfile.py", line 2100, in > _extract_member > os.makedirs(upperdirs) > File "C:\Program Files\Anaconda3\lib\os.py", line 231, in makedirs > makedirs(head, mode, exist_ok) > File "C:\Program Files\Anaconda3\lib\os.py", line 241, in makedirs > mkdir(name, mode) > PermissionError: [WinError 5] Access is denied: 'C:\\Program > Files\\Anaconda3\\pkgs\\vs2015_runtime-14.0.25123-0.tmp' > > > I’m using Anaconda3 on Windows 10. > Thanks for your help ! > ./mike > > ------------------------------------------------------------------------------ > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
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