Hi Andrea,
"format" was moved to another location with pandas 0.18. This issue was
fixed in RDKit, you just need to update.
https://github.com/rdkit/rdkit/commit/18b40822b22189bcc0d69a9f3dd5cdbcbf6f322a#diff-e87a869ec98a98d154043410f44fe94e
Cheers,
Samo
On Thu, Mar 9, 2017 at 9:31 AM, Volkamer, Andrea <andrea.volka...@charite.de
> wrote:
> Dear all,
>
> I have trouble showing a table including a ROMol column.
>
> # Add column to dataframe
> PandasTools.AddMoleculeColumnToFrame(df, smilesCol='smiles')
> # Remove compounds that couldn't be built
> df = df[~df.ROMol.isnull()]
>
> This works fine, but when I want to display it (df.head()), I get the
> following error:
>
> AttributeError: 'module' object has no attribute 'format'
>
> The first few columns are printed and have some image encoding in the
> respective column like:
>
> <img src="data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAMgAAADICAI
> AAAAiOjnJAAAG8UlEQVR4nO3d23bbIBRFUdTR//9l+qBYJSDJCNhwQGu+tMlIHdtaRn
> e6ee8d0Nqf0U8AayIsSBAWJAgLEoQFCcKCBGFBgrAgQViQICxIEBYkCAsShAUJwoIEY
> UGCsCBBWJAgLEgQFiQICxKEBQnCggRhQYKwIEFYkCAsSBAWJAgLEoQFCcKCBG .....
>
> Displaying single molecules or GridImages works fine. Am I missing something?
> I'm using rdkit version: 2016.03.1 and python 2.7.12, pandas 0.19.2.
>
> Thanks,
> Andrea
>
>
>
> ----
>
> Prof. Dr. Andrea Volkamer
>
> In-silico Toxicology Group
> Institute of Physiology, Charité Universitätsmedizin Berlin
> https://physiologie-cbf.charite.de/en/institute/workgroups/team_volkamer/
>
> Campus Mitte: Virchowweg 6, 10117 Berlin/ Philippstraße 13, Haus 18,
> 10115 Berlin
>
>
> Phone: +49 30 - 450 528 554 <030%20450528554> / 209 347 938
> E-Mail: andrea.volka...@charite.de
>
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