Dear RDKit users, I'm trying to plot a single molecule using RDKit. I use the following code
from rdkit.Chem import Draw from rdkit import Chem mol = Chem.MolFromSmiles('C1#CN2CCCCC1C2') Chem.rdmolops.SanitizeMol(mol) img = Draw.MolsToGridImage([mol], molsPerRow=1) img.save(res_dir + 'mol_1.png') and I get the attached figure. There is an alkyne bridging in the molecule, which as you can see in the figure, is visualized with a double bond instead of a triple bond. I was wondering what causes this issue and how to fix it. Thanks! Regards, Navid
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