Hi Stanislas,
I had a similar issue. Basically I wasn't able to install rpy2 with the python
I installed via fink.
The only way I was able to install it was with the mac os pre-installed python
in /usr/bin/python. I think it will also work if you compile python yourself.
Basically, I installed rpy2 with the pre-installed python 2.6 and moved the
rpy folder in site-packages to a location on my PYTHONPATH. That worked for me.
Yair
On Jul 11, 2012, at 2:20 PM, stanislas rebaudet wrote:
> Hello,
>
> I'm desperatly trying and retrying to install rpy2 on my Mac OS 10.6 in order
> to run SDA4PP plugin on QGIS. My version of R is 2.14.0 and it was obviously
> compiled with the option --enable-R-shlib. I've installed the Apple
> developper tools through xcode3.
>
> When I type easy_install rpy2 on the Terminal, I get a long list of warnings
> starting with
> warning: no previously-included files matching 'patch' found anywhere
> in distribution
> and ending with
> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ChooseFile’:
> ./rpy/rinterface/_rinterface.c:646: warning: ‘gstate’ may be used
> uninitialized in this function lipo: can't open input file:
> /var/folders/5L/5Li0yCI7EqmkqJ+Ra--M9U+++TI/-Tmp-//ccQiCvrB.out (No such file
> or directory) error: Setup script exited with error: command 'gcc-4.2' failed
> with exit status 1:
>
> I got a similar result installing manually rpy2-2.2.6.tar.gz through python
> setup.py install
>
> I also tryed through Macport with sudo port install py26-rpy2. It bugged
> again with:
> ---> Applying patches to glib2
> Error: org.macports.patch for port glib2 returned: command execution failed
> Error: Failed to install glib2
> Please see the log file for port glib2 for details:
>
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_glib2/glib2/main.log
> Error: The following dependencies were not installed: R cairo glib2 libpixman
> libpng xorg-xcb-util xorg-libxcb python27 db46 libedit openssl python_select
> sqlite3 xorg-libXau xorg-xproto xorg-libXdmcp xorg-libpthread-stubs
> xorg-xcb-proto xrender xorg-libX11 xorg-kbproto xorg-renderproto gcc45
> cctools cctools-headers llvm-3.0 llvm_select gcc_select gmp ld64 libmpc mpfr
> ppl glpk icu jpeg pango Xft2 gobject-introspection readline tcl tiff tk
> xorg-libXScrnSaver xorg-libXext xorg-xextproto xorg-scrnsaverproto
> xorg-libXmu xorg-libXt xorg-libsm xorg-libice python26
> To report a bug, follow the instructions in the guide:
> http://guide.macports.org/#project.tickets
> Error: Processing of port py26-rpy2 failed
>
> And on the log file for port glib2:
> :info:patch sh: line 0: cd:
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_glib2/glib2/work/glib-2.32.3:
> No such file or directory
> :info:patch Command failed: cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_glib2/glib2/work/glib-2.32.3"
> && /usr/bin/patch -p0 <
> '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/glib2/files/patch-configure.diff'
> :info:patch Exit code: 1
> :error:patch org.macports.patch for port glib2 returned: command execution
> failed
> :debug:patch Error code: CHILDSTATUS 96571 1
> :debug:patch Backtrace: command execution failed
> while executing
> "system $fullcmdstring"
> ("eval" body line 1)
> invoked from within
> "eval system $notty $nice \$fullcmdstring"
> invoked from within
> "command_exec patch "" "< '$patch'""
> (procedure "portpatch::patch_main" line 35)
> invoked from within
> "$procedure $targetname"
> :info:patch Warning: targets not executed for glib2: org.macports.activate
> org.macports.patch org.macports.configure org.macports.build
> org.macports.destroot org.macports.install
> :error:patch Failed to install glib2
> :debug:patch couldn't open
> "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex":
> no such file or directory
> while executing
> "open [file join $dir tclIndex]"
> :notice:patch Please see the log file for port glib2 for details:
>
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_devel_glib2/glib2/main.log
>
> I've already posted this request on StackExchange and "it might be that the
> latest OSX releases are compiling for LLVM (and the code base is giving it
> trouble)".
> Any idea ?
> Isn't there a working dmg image file available somewhere ?
>
> Thanks for your help.
>
> Stanislas Rebaudet
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats.
> http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/_______________________________________________
> rpy-list mailing list
> rpy-list@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/rpy-list
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
rpy-list mailing list
rpy-list@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rpy-list
