On 30 May 2013 at 19:27, Laurent Gautier wrote:
| Not a direct answer to your question, but as the long list of deprecation
| warnings occurring during the installation suggest it, investing the
| (presumably little) effort required to help Galaxy move to rpy2 might be a
| better idea.
|
| The direct answer is: an include file from R has moved, or disappeared. Dirk
| Eddelbuettel has been maintaining the rpy package on debian. Check if there is
| .deb for rpy/R-3.0. If yes, the SVN source for rpy should build. If not, you
| are probably on your own.
Yes, something had come up as R Core tends to tighten the APU over time. The
changelog below was from my build against R 3.0.0 a few weeks ago (and I took
this as reminder to update things for R 3.0.1 just now):
rpy (1.0.3-25) unstable; urgency=low
* src/RPy.h: Comment-out (Rf_)PrintWarnings() which is no longer
available under R 3.0.0; change committed to upstream SVN too
* src/rpymodule.c: Idem (Closes: #705847)
-- Dirk Eddelbuettel <e...@debian.org> Mon, 22 Apr 2013 19:22:49 -0500
The last few commits to the rpy SVN were in all mine as I kept the Debian
package going -- mostly to continuity. I generally second Laurent's
recommendation: you probably really want to use RPy2.
Hth, Dirk
--
Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com
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