[base] BASE 2.0 has been released

2006-08-31 Thread Nicklas Nordborg
Hello all,

I am happy to announce that BASE 2.0 is now available for download:
http://base.thep.lu.se/wiki/DownloadPage

Installation instructions and other documentation are available at the 
BASE 2 home page: http://base.thep.lu.se/

/Nicklas

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Re: [base] Migrate script fails, no error messages

2006-08-31 Thread Chris Wiita
That was the problem!  Group ID for a user, not a group.  I just changed 
the owner to an actual group, and the migration script appears to have 
worked now.  Thanks a lot!

--Chris W

Nicklas Nordborg wrote:
 Chris Wiita wrote:
   
 Alright, that makes sense.  The first time I ran the script the error 
 was different, and in repeating the script, I never noticed it was way 
 off in the first place!  I turned logging, dropped both BASE2 DBs and 
 recreated them, and ran initdb.sh.  It was successful.  Confirmed the 
 databases were present with myphpadmin, and made no login attempts 
 (didn't want to touch the db).  I ran the migrate script, and this is 
 the error. It managed to get through the UserTransfers--this is log from 
 the last user transfer, before it moves onto the next part, where it fails.

  
 11:54:39,164  INFO migration:77 - UserTransfer: Assigning role Share 
 With World to user : Yuhei
 11:54:39,237  INFO migration:77 - RoleTransfer: getRoleIds: 251658196
 11:54:39,259  INFO migration:77 - UserTransfer: Assigning role Power 
 user to use r : Ezra
 11:54:39,265  INFO migration:77 - UserTransfer: Assigning role Plugin 
 Administra tor to user : Ezra
 11:54:39,280  INFO migration:77 - UserTransfer: Assigning role File 
 Formats Admi nistrator to user : Ezra
 11:54:39,287  INFO migration:77 - UserTransfer: Assigning role 
 Hybridizations Vi ewer to user : Ezra
 11:54:39,295  INFO migration:77 - UserTransfer: Assigning role 
 Biomaterials View er to user : Ezra
 11:54:39,301  INFO migration:77 - UserTransfer: Assigning role Share 
 With World to user : Ezra
 11:54:39  0 : 18  100%4   00:00:00
 11:54:39 -
 11:54:39 Creating home directories
 11:54:39   Left DoneItems/sETE
 11:54:39 18 :  00%
 11:54:39  0 : 18  100%   18   00:00:00
 11:54:39 -
 11:54:39,915  INFO migration:77 - Migrater: startTransfer: Group
 11:54:39 Group
 11:54:40,060  INFO migration:68 - Free memory : 360 MByte
 11:54:40   Left DoneItems/sETE
 11:54:40  1 :  00%
 11:54:40,325  INFO migration:68 - Free memory : 382 MByte
 11:54:40  0 :  1  100%1   00:00:00
 11:54:40 -
 11:54:40,329  INFO migration:77 - Migrater: startTransfer: Wizzzard
 11:54:40 Wizzzard
 11:54:40,463  INFO migration:68 - Free memory : 383 MByte
 11:54:40   Left DoneItems/sETE
 11:54:40 16 :  00%
 11:54:40,481  INFO migration:77 - WizzzardTransfer: setSharedItemData: 15
 setSharedItemData : 15
 [EMAIL PROTECTED] bin]#
  

 Any ideas what may be the cause here?  This BASE1 was set up before I 
 started administering this system, but it was pristine as far as I 
 know.  I upgraded a few times, and there was never any issue with the 
 database (or issues at all, for that matter).  Thanks for any help!
 

 I really don't know what is going on. But, it turns out that the 
 migration program is really sensitive about the correctness of the Base1 
 database. What I suspect is that in your databases there are relations 
 from one item to another that no longer exists. Can you help me verify this?

 First, check the 'Wizzzard' table for any entry which has gid=15. Then,
 check the 'UserGroup' table and look for an entry with id=15 and 
 isAccount=0. If what I suspect is true, you will not be able to find 
 that in the UserGroup table.


 /Nicklas

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Using Tomcat but need to do more? Need to support web services, security?
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