Thanks that worked and am now able to see and run the Virtual Array 
plugin.  Unfortunately the plugin also fails with an error when running:
Error: Error during export: Item not found: Unknown reporter field: 
reporter (you can add this field as an formula)

Thanks again for all your help,

Thomas


On 03/14/2011 07:27 AM, Nicklas Nordborg wrote:
> On 2011-03-11 18:13, Thomas Person wrote:
>> Ok, I guess I'm missing something in the configuration of the plugin,
>> for all the plugins associated with the Base1PluginExecuter.  If i
>> simply create the plugin under the Base1PluginExecuter but then not
>> configure it, then I am given the option under the drop down to run
>> it when attempting "Run an analysis plugin" but it does not function
>> as it hasn't been configured.
> Oh... I guess we have to look into that. Unconfigured plug-in shouldn't
> really be in that list.
>
>   >  But once i do configure it, with the
>> proper file and path to the run command. the option to run the plugin
>> in the drop down under run an analysis plugin disappears as an option
>> to run.
> We have checked the installation procedure of the VirtualArray plug-in
> and it turns out that the configuration file that is used is incorrect.
> The problem with the 'descr' field has already been fixed but there are
> two more issues:
>
>    * The 'geneAverages' setting should be '1', not '0'.
>    * The 'minChannels' setting should be '1', not '2'.
>
> Fortunately both settings can be changed in the web gui. Start the
> configuration wizard for the VirtualArray plug-in. In the first step,
> make sure to NOT select a file. This will take you to a second step
> where you can change the value for the two parameters mentioned above.
> The 'geneAverages' setting is called 'Average on reporters' in the wizard.
>
> Hope this works better.
>
> /Nicklas
>
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