Re: [base] update issue from 2.14.0 to 2.16.1
I guess we really should change the compilation to use '-target 1.6' Or simply omit it. In general I can think of few scenarios where you'd want to target an older VM than the one you are working with (one reason might be compiler fixes that were not back-ported): that invites the sort of errors the OP ran into, unless the developer is extremely careful not to use any of the newer functionality. -- O.L. -- Increase Visibility of Your 3D Game App Earn a Chance To Win $500! Tap into the largest installed PC base get more eyes on your game by optimizing for Intel(R) Graphics Technology. Get started today with the Intel(R) Software Partner Program. Five $500 cash prizes are up for grabs. http://p.sf.net/sfu/intelisp-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] update issue from 2.14.0 to 2.16.1
Java : Java(TM) Platform, Standard Edition for Business; 1.5.0_16-b02; Sun Microsystems Inc. java.lang.NoSuchMethodError: java.util.Arrays.copyOf([Ljava/lang/Object;I)[Ljava/lang/Object; You're running Java 1.5 but the Array.copyOf methods were introduced in Java 1.6: http://download.oracle.com/javase/6/docs/api/java/util/Arrays.html#copyOf%28T[],%20int%29 I'm surprised this didn't cause an incompatibility error earlier, though. -- O.L. -- Increase Visibility of Your 3D Game App Earn a Chance To Win $500! Tap into the largest installed PC base get more eyes on your game by optimizing for Intel(R) Graphics Technology. Get started today with the Intel(R) Software Partner Program. Five $500 cash prizes are up for grabs. http://p.sf.net/sfu/intelisp-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] update issue from 2.14.0 to 2.16.1
That line of code (IntensityFormula.java:91) was changed in 2.16 so it is not so strange. I meant I was surprised that this 1.5 VM didn't immediately reject classes obviously compiled against 1.6. Did you use the -target 1.5 option in compilation? -- O.L. -- Increase Visibility of Your 3D Game App Earn a Chance To Win $500! Tap into the largest installed PC base get more eyes on your game by optimizing for Intel(R) Graphics Technology. Get started today with the Intel(R) Software Partner Program. Five $500 cash prizes are up for grabs. http://p.sf.net/sfu/intelisp-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] Querying annotations
Thanks. Between that and the other thread I am getting I should be able to work out something. What about AnnotationSet.getQuery(), though: can't you search that and then use getItem() to go back to the item? -- O.L. -- This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] login and logout errors not propagated as AxisFault
Ahah! Now it makes sense. Many thanks. I am writing another service of my own, i.e., exposing Application.newSession(String, String, String) and a few related methods and all the methods in my service have a void return type, so that fits. I was also wondering why *your* login etc methods echo the SID. I just reread the services-related section of the docs and now I see that this trap is very clearly signposted in §28.3.1. Mea culpa. I was new to web services the first time I read this and had bigger worries than return types, so it didn't register. Regards, -- O.L. -- This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
[base] login and logout errors not propagated as AxisFault
I noticed that not all PermissionDeniedException's thrown on the server side (you can see them in the Tomcat log) are relayed to the client side as an AxisFault. AFAICT this affects all such exceptions thrown by Application. Other instances of a PermissionDeniedException, e.g., when trying to access an item, are normally relayed. In the log the difference between the two is that the silent permission errors have an entry of the form: timestamp ERROR RPCInOnlyMessageReceiver:77 - Permission denied: msg net.sf.basedb.core.PermissionDeniedException: Permission denied: msg stack trace timestamp ERROR AbstractMessageReceiver:101 - org.apache.axis2.AxisFault: Permission denied: msg whereas those with are properly relayed as an AxisFault have an entry of the form timestamp ERROR RPCMessageReceiver:153 - Permission denied: msg java.lang.reflect.InvocationTargetException first part of stack trace Caused by: net.sf.basedb.core.PermissionDeniedException: Permission denied: msg second part of stack trace This is *very* annoying because, for instance, if you have an invalid login call followed by a read call, your code will proceed to the read call without having logged in, at which point you will get a Permission denied: Not allowed to read xyz, but unless you read the Tomcat log you will not realize that the root cause was not the read call but the failed login. What sorcery is this? Why aren't *all* errors on the server side manifested as an AxisFault on the client side? Note that this is with BASE 2.9.2 and thus with Axis 1.3, neither of which is the current version but it is what I am stuck with. Thanks, -- O.L. -- This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] Property '' has one or more invalid characters. Only a-z, A-Z, 0-9 and . is allowed.
'virus_family' has one or more invalid characters. Only a-z, A-Z, 0-9 and . is allowed. I think that message comes from a Hibernate query and refers to a column name used in constraints; check your constraints. -- O.L. -- Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] Property '' has one or more invalid characters. Only a-z, A-Z, 0-9 and . is allowed.
Ah ok, so BASE has built a constraint involving my new column name? I would think so, although it's been 6 months since I had wade into that. Suggestion: turn on full query tracing in the log by putting all this into your log4j.properties: # logging queries in BASE log4j.logger.net.sf.basedb.core=warn log4j.logger.net.sf.basedb.core.query.ql=debug log4j.logger.net.sf.basedb.core.query.bind=debug log4j.logger.org.hibernate.SQL=debug and then grep the log for virus_name. Sorry I don't remember where the log4j.properties file should go. -- O.L. -- Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] Property '' has one or more invalid characters. Only a-z, A-Z, 0-9 and . is allowed.
Well, I agree with you that DC-BASE (and Hibernate!) can be rather user-unfriendly at times but I am myself only a user. I reported something that helped me once, no more no less. Regards, -- O.L. -- Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
[base] Error creating rawbioassay
I tried to create a rawbioassay by simply accepting the defaults in the wizard (since no field seems to be required). After clicking on Save I got a popup telling me the rawbioassay was successfully created but still it did not show up under View - RawBioassays. What is more I can actually find it if I fire a raw SQL query against the physical table holding rawbioassays. At this point I am totally confused. If something was wrong why did BASE post a success message and if not then why doesn't it show the new rawbioassay in the UI? The same problem exists with other items, btw; I use rawbioassays merely as an example. -- Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensing option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] Error creating rawbioassay
That something doesn't show up in the GUI is usually due to a filter that is active in the list. To clear all filters select the 'clear filter' option in the 'view/presets' dropdown. I don't find such a dropdown. Perhaps I should mention that this is on 2.9.2 and no unfortunately I can't upgrade (long story). Are you sure that you are checking in the correct database when you are doing the manual check? I have only one BASE instance. -- O.L. -- Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensing option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
[base] Illumina plugin
I am not having much luck installing that plugin. It wants you to run updatedb.sh. When I do that it says Building database, which is alarming in and of itself since that suggests it is rebuilding the db from scratch, which begs the question of whether it is possible to install that plugin on a live, already populated base instance: I don't want it to throw out all the existing data. But that's not the worst of of it. It immediately complains of APPARENT DEADLOCK!!! (twice) and also (many times) of Access denied for user 'base2user'@'localhost' (using password: YES), which is baffling since I supplied the correct uid and pwd at the command line when starting the script. Finally it gives up. Can anyone make a suggestion? -- Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensing option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
[base] Cloning a BASE instance
Are there instructions and/or scripts anywhere to assist with the cloning of a BASE2 instance or is it a use-your-brain-dude kind of thing? My problem is that I got a dump of a MySQL db but nothing else and there seem to be a lot of dangling links manifesting themselves in red-band error messages here and there, e.g., Item not found: RawDataType[id=blah]. That is not surprising since BASE seems to hold a lot of stuff in files on disk rather than in the db but it's unclear how to go about fixing that if you are not familiar with BASE. It would be nice if there was a fool-proof, automated procedure for cloning a BASE2 instance. -- Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensing option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
Re: [base] Cloning a BASE instance
The problem with zipping the BASE tree is that is no guarantee that all necessary files are under the BASE root. From looking at base.config there are at least three more roots to consider: * secondary storage area * plugins area * user files area Any others? -- Crystal Reports - New Free Runtime and 30 Day Trial Check out the new simplified licensing option that enables unlimited royalty-free distribution of the report engine for externally facing server and web deployment. http://p.sf.net/sfu/businessobjects ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
[base] Application.newSessionControl: BASE starts and stops immediately
I am experimenting with the BASE2 API. When I call Application.newSessionControl(null, test1, null); BASE2 seems to start successfully (BASE is up and running) but then shuts down immediately (Stopping BASE). What am I doing wrong? Thanks, -- O.L. -- OpenSolaris 2009.06 is a cutting edge operating system for enterprises looking to deploy the next generation of Solaris that includes the latest innovations from Sun and the OpenSource community. Download a copy and enjoy capabilities such as Networking, Storage and Virtualization. Go to: http://p.sf.net/sfu/opensolaris-get ___ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject unsubscribe to basedb-users-requ...@lists.sourceforge.net
