Re: [base] updating extended-properties.xml
Hi Nicklas, We have run into problems after editing the raw-data-types.xml and extended-properties.xml files. After each edit the server was stopped, I ran updatedb.sh and updateindexes.sh and restarted the server. However we can now no longer see any reporters via the gui (they are still accessible in the Reporters table via MySQL) and no new reporters can be imported. Has this kind of problem after modifying these xml files together been seen before? It is hard to tell exactly what happens. There is a known issue about invalid values in the extended-properties.xml and raw-data-types.xml that aren't detected (http://base.thep.lu.se/ticket/480) and later on they will produces errors. To be able to check if your problem is related to this I have to know what changes you made to the configuration files. Thanks for the reply - yes that was it. We did see the same error message as in the above ticket (Unknown column 'reporterda0_.' in 'field list') in the logs, and sure enough I had made a typo in the extended-properties.xml which prevented the correct update to the Reporters table (it did not add one of the columns). Thanks for the help. Regards, Simon Another thing to remember is that the updatedb.sh script can only add new columns, it can't modify or delete existing columns. If you have done such changes you must do the corresponding changes manually in MySQL. /Nicklas - Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.phpp=sourceforgeCID=DEVDEV ___ The BASE general discussion mailing list [EMAIL PROTECTED] unsubscribe: send a mail with subject unsubscribe to [EMAIL PROTECTED]
[base] updating extended-properties.xml
Hi, We have run into problems after editing the raw-data-types.xml and extended-properties.xml files. After each edit the server was stopped, I ran updatedb.sh and updateindexes.sh and restarted the server. However we can now no longer see any reporters via the gui (they are still accessible in the Reporters table via MySQL) and no new reporters can be imported. Has this kind of problem after modifying these xml files together been seen before? Many thanks, Simon The stack trace when you go into Experiment Explorer in a pre existing analysis, is: Experiment Options… Unexpected error BaseException on page /views/experiments/explorer/view/view.jsp Version BASE 2.2.1 (build #0; schema #29) Web server Apache Tomcat/5.5.17 Database Dialect org.hibernate.dialect.MySQLInnoDBDialect JDBC Driver com.mysql.jdbc.Driver (version 5.0) Java runtime Java(TM) 2 Runtime Environment, Standard Edition (1.5.0_09-b03), Sun Microsystems Inc. Operating system Linux amd64 2.6.19-1.2895.fc6 Memory Total: 157.0 MB Free: 84.7 MB Max: 444.5 MB Browser Mozilla/5.0 (Windows; U; Windows NT 5.1; en-GB; rv:1.8.1.3) Gecko/20070309 Firefox/2.0.0.3 Error message could not load an entity: [net.sf.basedb.core.data.ReporterData#66625] Stack trace ...at HibernateUtil.loadData(HibernateUtil.java:1085) ...at Reporter.getById(Reporter.java:82) ...at net.sf.basedb.clients.web.ExperimentExplorer.getReporter(ExperimentExplorer.java:564) ...at org.apache.jsp.views.experiments.explorer.view.view_jsp._jspService(view_jsp.java:235) ...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:332) ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314) ...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:264) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:71) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) ...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) ...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) ...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) ...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) ...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) ...at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80) ...at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) ...at java.lang.Thread.run(Thread.java:595) Caused by: org.hibernate.exception.SQLGrammarException ...at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:67) ...at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) ...at org.hibernate.loader.Loader.loadEntity(Loader.java:1865) ...at org.hibernate.loader.entity.AbstractEntityLoader.load(AbstractEntityLoader.java:48) ...at org.hibernate.loader.entity.AbstractEntityLoader.load(AbstractEntityLoader.java:42) ...at org.hibernate.persister.entity.AbstractEntityPersister.load(AbstractEntityPersister.java:3038) ...at org.hibernate.impl.StatelessSessionImpl.get(StatelessSessionImpl.java:158) ...at org.hibernate.impl.StatelessSessionImpl.get(StatelessSessionImpl.java:153) ...at org.hibernate.impl.StatelessSessionImpl.get(StatelessSessionImpl.java:145) ...at HibernateUtil.loadData(HibernateUtil.java:1081) ...at Reporter.getById(Reporter.java:82) ...at net.sf.basedb.clients.web.ExperimentExplorer.getReporter(ExperimentExplorer.java:564) ...at org.apache.jsp.views.experiments.explorer.view.view_jsp._jspService(view_jsp.java:235) ...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:332) ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314) ...at
Re: [base] updating extended-properties.xml
Simon McGowan wrote: Hi, We have run into problems after editing the raw-data-types.xml and extended-properties.xml files. After each edit the server was stopped, I ran updatedb.sh and updateindexes.sh and restarted the server. However we can now no longer see any reporters via the gui (they are still accessible in the Reporters table via MySQL) and no new reporters can be imported. Has this kind of problem after modifying these xml files together been seen before? It is hard to tell exactly what happens. There is a known issue about invalid values in the extended-properties.xml and raw-data-types.xml that aren't detected (http://base.thep.lu.se/ticket/480) and later on they will produces errors. To be able to check if your problem is related to this I have to know what changes you made to the configuration files. Another thing to remember is that the updatedb.sh script can only add new columns, it can't modify or delete existing columns. If you have done such changes you must do the corresponding changes manually in MySQL. /Nicklas Many thanks, Simon The stack trace when you go into Experiment Explorer in a pre existing analysis, is: Experiment Options… Unexpected error BaseException on page /views/experiments/explorer/view/view.jsp Version BASE 2.2.1 (build #0; schema #29) Web server Apache Tomcat/5.5.17 Database Dialect org.hibernate.dialect.MySQLInnoDBDialect JDBC Driver com.mysql.jdbc.Driver (version 5.0) Java runtime Java(TM) 2 Runtime Environment, Standard Edition (1.5.0_09-b03), Sun Microsystems Inc. Operating system Linux amd64 2.6.19-1.2895.fc6 Memory Total: 157.0 MB Free: 84.7 MB Max: 444.5 MB Browser Mozilla/5.0 (Windows; U; Windows NT 5.1; en-GB; rv:1.8.1.3) Gecko/20070309 Firefox/2.0.0.3 Error message could not load an entity: [net.sf.basedb.core.data.ReporterData#66625] Stack trace ...at HibernateUtil.loadData(HibernateUtil.java:1085) ...at Reporter.getById(Reporter.java:82) ...at net.sf.basedb.clients.web.ExperimentExplorer.getReporter(ExperimentExplorer.java:564) ...at org.apache.jsp.views.experiments.explorer.view.view_jsp._jspService(view_jsp.java:235) ...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:332) ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314) ...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:264) ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:71) ...at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) ...at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) ...at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) ...at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) ...at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) ...at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) ...at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) ...at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) ...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) ...at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) ...at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) ...at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80) ...at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) ...at java.lang.Thread.run(Thread.java:595) Caused by: org.hibernate.exception.SQLGrammarException ...at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:67) ...at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) ...at org.hibernate.loader.Loader.loadEntity(Loader.java:1865) ...at org.hibernate.loader.entity.AbstractEntityLoader.load(AbstractEntityLoader.java:48) ...at org.hibernate.loader.entity.AbstractEntityLoader.load(AbstractEntityLoader.java:42) ...at org.hibernate.persister.entity.AbstractEntityPersister.load(AbstractEntityPersister.java:3038) ...at org.hibernate.impl.StatelessSessionImpl.get(StatelessSessionImpl.java:158) ...at
