[ccp4bb] arp/warp installation
Dear all, I downloaded ARP/wARP 7.1 from EMBL-Hamburg and executed ./install.sh. All tests pass up to and including refmac version check (see log below). After that, a Badly formed number in an if test. What could be the issue? The system is Redhat EL 5.4, tcsh. Thanks. Andreas ld-andf 133% ./install.sh ARP/wARP installer is checking your c-shell... c-shell is installed on your machine at /bin/csh Your login shell is: /bin/tcsh Checking permissions for /dev/null- OK Checking availability of sed command - OK Checking availability of tail command - OK Checking availability of awk command - OK Checking decimal separator- OK Checking ARP/wARP directory path - OK Checking ARP/wARP directory structure - OK Checking java installation- installed version is 1.6.0 Checking java version number - OK Checking python installation - installed version is 2.4.3 Checking python version number- OK Python executables are available in /csb/soft/Linux/src/arp_warp_7.1/byte-code/python-2.4 Checking operating system name- Linux Checking processor type - i686 ARP/wARP version 7.1 executables for this platform are available in /csb/soft/Linux/src/arp_warp_7.1/bin/bin-i686-Linux Installing script and data files for: bin-athlon-Linux bin-i386-Darwin bin-i686-Linux bin-ia64-Linux bin-powerpc-Darwin bin-x86_64-Linux Checking CCP4 ARP/wARP installation - OK Checking refmac5 installation - installed version is 5.5.0109 Checking refmac5 version number - OK if: Badly formed number. -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk
Re: [ccp4bb] arp/warp installation
The attached slightly modified script fixes that problem Phil install_csh.sh.gz Description: GNU Zip compressed data On 4 Jan 2010, at 11:15, Andreas Förster wrote: Dear all, I downloaded ARP/wARP 7.1 from EMBL-Hamburg and executed ./install.sh. All tests pass up to and including refmac version check (see log below). After that, a Badly formed number in an if test. What could be the issue? The system is Redhat EL 5.4, tcsh. Thanks. Andreas ld-andf 133% ./install.sh ARP/wARP installer is checking your c-shell... c-shell is installed on your machine at /bin/csh Your login shell is: /bin/tcsh Checking permissions for /dev/null- OK Checking availability of sed command - OK Checking availability of tail command - OK Checking availability of awk command - OK Checking decimal separator- OK Checking ARP/wARP directory path - OK Checking ARP/wARP directory structure - OK Checking java installation- installed version is 1.6.0 Checking java version number - OK Checking python installation - installed version is 2.4.3 Checking python version number- OK Python executables are available in /csb/soft/Linux/src/arp_warp_7.1/byte-code/python-2.4 Checking operating system name- Linux Checking processor type - i686 ARP/wARP version 7.1 executables for this platform are available in /csb/soft/Linux/src/arp_warp_7.1/bin/bin-i686-Linux Installing script and data files for: bin-athlon-Linux bin-i386-Darwin bin-i686-Linux bin-ia64-Linux bin-powerpc-Darwin bin-x86_64-Linux Checking CCP4 ARP/wARP installation - OK Checking refmac5 installation - installed version is 5.5.0109 Checking refmac5 version number - OK if: Badly formed number. -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk
Re: [ccp4bb] arp/warp installation
As Phil realized, the leading zeros in the refmac5 version number were the culprit that broke the original installation script. His modified version works beautifully. Thanks. Andreas On 04/01/2010 11:27, Phil Evans wrote: The attached slightly modified script fixes that problem Phil On 4 Jan 2010, at 11:15, Andreas Förster wrote: Dear all, I downloaded ARP/wARP 7.1 from EMBL-Hamburg and executed ./install.sh. All tests pass up to and including refmac version check (see log below). After that, a Badly formed number in an if test. What could be the issue? The system is Redhat EL 5.4, tcsh. Thanks. Andreas ld-andf 133% ./install.sh ARP/wARP installer is checking your c-shell... c-shell is installed on your machine at /bin/csh Your login shell is: /bin/tcsh Checking permissions for /dev/null- OK Checking availability of sed command - OK Checking availability of tail command - OK Checking availability of awk command - OK Checking decimal separator- OK Checking ARP/wARP directory path - OK Checking ARP/wARP directory structure - OK Checking java installation- installed version is 1.6.0 Checking java version number - OK Checking python installation - installed version is 2.4.3 Checking python version number- OK Python executables are available in /csb/soft/Linux/src/arp_warp_7.1/byte-code/python-2.4 Checking operating system name- Linux Checking processor type - i686 ARP/wARP version 7.1 executables for this platform are available in /csb/soft/Linux/src/arp_warp_7.1/bin/bin-i686-Linux Installing script and data files for: bin-athlon-Linux bin-i386-Darwin bin-i686-Linux bin-ia64-Linux bin-powerpc-Darwin bin-x86_64-Linux Checking CCP4 ARP/wARP installation - OK Checking refmac5 installation - installed version is 5.5.0109 Checking refmac5 version number - OK if: Badly formed number. -- Andreas Förster, Research Associate Paul Freemont Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk
