First off, thanks to all those who sent me their suggestions, a great
variety indeed. Here's the summary:
- turbo-frodo can do local rotamer optimization based on environment.
- SCRWL and WHAT-IF are servers for homology modeling
- Swiss PDB viewer/DeepView can also do homology modeling, but not
natively on Linux
- mutate and regularize geometry in coot
- phenix.pdbtools from the command line (might be able to minimize only
part of the model)
Andreas
--
Andreas Förster, Research Associate
Paul Freemont & Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
