[CMake] ExternalProject_Add fails with gcc-4.9.3
cmake version 3.4.3
Hi,
I have ExternalProject_Add (attached), which works with gcc-4.4.7, but fails
with gcc-4.9.3:
...
...
[100%] Performing build step for 'ep_netcdf'
CMake Error at
/scratch/tesari/build/cee/gnu.dbg/netcdf/src/ep_netcdf-stamp/ep_netcdf-build
-DEBUG.cmake:16 (message):
Command failed: 2
'make'
See also
/scratch/tesari/build/cee/gnu.dbg/netcdf/src/ep_netcdf-stamp/ep_netcdf-build
-*.log (attached).
If I execute configure and make, as defined in ${CONFIGURE_COMMAND}, it
works.
What is the meaning of "Command failed: 2 'make'" error message, and how
should I track it down? Any help is highly appreciated.
Thanks in advance,
Ted
ExternalProject_Add( ep_netcdf
URL ${CMAKE_SOURCE_DIR}/src/netcdf/netcdf_distro.tar
PREFIX ${CMAKE_CURRENT_BINARY_DIR}/netcdf
LOG_CONFIGURE 1
LOG_BUILD 1
LOG_INSTALL 1
LOG_DOWNLOAD 0
LOG_UPDATE 0
BUILD_IN_SOURCE 1
CONFIGURE_COMMAND
${CMAKE_CURRENT_BINARY_DIR}/netcdf/src/ep_netcdf/configure
--enable-64bit FC=" " F90=${CMAKE_Fortran_COMPILER}
CXX=${CMAKE_CXX_COMPILER} CC=${CMAKE_C_COMPILER}
BUILD_COMMAND ${MAKE}
)
ep_netcdf-build-DEBUG.cmake
set(command "${make}")
execute_process(
COMMAND ${command}
RESULT_VARIABLE result
OUTPUT_FILE
"/scratch/tesari/build/cee/gnu.dbg/netcdf/src/ep_netcdf-stamp/ep_netcdf-buil
d-out.log"
ERROR_FILE
"/scratch/tesari/build/cee/gnu.dbg/netcdf/src/ep_netcdf-stamp/ep_netcdf-buil
d-err.log"
)
if(result)
set(msg "Command failed: ${result}\n")
foreach(arg IN LISTS command)
set(msg "${msg} '${arg}'")
endforeach()
set(msg "${msg}\nSee also\n
/scratch/tesari/build/cee/gnu.dbg/netcdf/src/ep_netcdf-stamp/ep_netcdf-build
-*.log")
message(FATAL_ERROR "${msg}")
else()
set(msg "ep_netcdf build command succeeded. See also
/scratch/tesari/build/cee/gnu.dbg/netcdf/src/ep_netcdf-stamp/ep_netcdf-build
-*.log")
message(STATUS "${msg}")
endif()
--
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[CMake] How to make a Fortran file dependent on #inclde files
Hi, I have a Fortran project with numerous #include files. When a #include file is changed, CMake does not detect the change, and does not rebuild the objects using this include file. In order to reflect the change, currently I ‘make clean; make’, which rebuilds the entire project. Is there a way to tell CMake that a Fortran file depends from its #include files? Thanks in advance, Ted P.S. I use cmake-3.4.3 -- Powered by www.kitware.com Please keep messages on-topic and check the CMake FAQ at: http://www.cmake.org/Wiki/CMake_FAQ Kitware offers various services to support the CMake community. For more information on each offering, please visit: CMake Support: http://cmake.org/cmake/help/support.html CMake Consulting: http://cmake.org/cmake/help/consulting.html CMake Training Courses: http://cmake.org/cmake/help/training.html Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/cmake
[CMake] FW: CTest question
', '0'] 113: /Users/tesari/kodiak/trunk/benchmark/Scripts/assert_case.py called with 3 arguments: 113: 1 /Users/tesari/build/gnu.dbg/CTEST/zamod/hskdk 113: 2 /Users/tesari/kodiak/trunk/CTEST/zamod/../GOLD/zamod/hskdk 113: 3 0 113: /Users/tesari/build/gnu.dbg/CTEST/zamod/hskdk does not exist! From: Eric Noulard [mailto:eric.noul...@gmail.com] Sent: Wednesday, May 17, 2017 10:54 PM To: T.Sariyski <tzsari...@gmail.com <mailto:tzsari...@gmail.com> > Cc: CMake ML <cmake@cmake.org <mailto:cmake@cmake.org> > Subject: Re: [CMake] CTest question We lack information on how your test are failing. If they all timeout then may be you should setup a proper timeout for the test. The actual execution speed of a test may depend on the load of your machine or the network (depending on what the test are actually doing). This may be even more sensible if your test are run in parallel. Do you run ctest with --parallel option? Do your tests depends on each other? If so did you setup test dependencies? Le 17 mai 2017 10:59 PM, "T.Sariyski" < <mailto:tzsari...@gmail.com> tzsari...@gmail.com> a écrit : Hi, I wonder what is the reason that sometimes ctest ends with numerous ‘Failed’ and ‘Timeout’, which ‘ctest –rerun-failed’ reports ‘Passed’. At times the number of these false failures is about one third. I guess that the problem is in the way I set my tests, but I have no clue where to look, or how to ‘debug’ the ctest run. Any advice is highly appreciated. Thanks, Ted -- Powered by www.kitware.com <http://www.kitware.com> Please keep messages on-topic and check the CMake FAQ at: http://www.cmake.org/Wiki/CMake_FAQ Kitware offers various services to support the CMake community. For more information on each offering, please visit: CMake Support: http://cmake.org/cmake/help/support.html CMake Consulting: http://cmake.org/cmake/help/consulting.html CMake Training Courses: http://cmake.org/cmake/help/training.html Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/cmake -- Powered by www.kitware.com Please keep messages on-topic and check the CMake FAQ at: http://www.cmake.org/Wiki/CMake_FAQ Kitware offers various services to support the CMake community. For more information on each offering, please visit: CMake Support: http://cmake.org/cmake/help/support.html CMake Consulting: http://cmake.org/cmake/help/consulting.html CMake Training Courses: http://cmake.org/cmake/help/training.html Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/cmake
Re: [CMake] CTest question
Hi Eric,
I am sorry I did not state the question clear enough. Let me first say that
tests does not depend on each other, and running with or without –parallel
does not make much of difference.
Here is how I set the tests . This is a Fortran code, it does not return.
ADD_TEST command is a call to CMAKE, which (i) executes the Fortran code, and
(ii) executes a python script, a metrics of how close the solution is to the
reference data. I have a PASS_REGULAR_EXPRESSION property, passRegex,
associated with the test. When a test fails, the output is that the required
regular expression ${passRegex} is not found. A test and the python script are
attached. Please let me know if more information is needed.
Thanks in advance,
Ted
CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
project(project_name Fortran )
enable_testing()
set (SRUN_COMMAND /bin/sh -c "cd ${ CMAKE_CURRENT_BINARY_DIR } &&
$ ${PROJECT_NAME}")
add_custom_target(${PROJECT_NAME}_srun COMMAND ${SRUN_COMMAND})
set(TARGET_NAME ${PROJECT_NAME}_serial)
add_test(NAME ${TARGET_NAME}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
COMMAND ${CMAKE_COMMAND}
-D "PRE_DELETE_OUTPUT_FILES:BOOL=true"
-D "OUTPUT_FILES:STRING=${files_to_delete}"
-D "PROGRAM1:STRING=${SRUN_COMMAND}"
-D
"PROGRAM2:STRING=python;${assert_case};${hs_work_file};${hs_gold_file};0"
-P "run_and_assert.cmake")
set(passRegex "CALCULATION TERMINATED BECAUSE STOP TIME ACHIEVED" "ctest:
SUCCESS")
set_property(TEST ${TARGET_NAME}
PROPERTY PASS_REGULAR_EXPRESSION "${passRegex}")
/> cat run_and_assert.cmake
…
EXECUTE_PROCESS(COMMAND ${PROGRAM1}
RESULT_VARIABLE error
ERROR_FILE err.log
OUTPUT_FILE out.log
)
IF(error)
MESSAGE(FATAL_ERROR "Executing \"${PROGRAM1}\" FAIED! error=${error}")
ENDIF()
EXECUTE_PROCESS(COMMAND ${PROGRAM2}
RESULT_VARIABLE status)
IF(status)
MESSAGE(SEND_ERROR "Executing \"${PROGRAM2}\" FAILED! status=${status}")
ENDIF()
From: Eric Noulard [mailto:eric.noul...@gmail.com]
Sent: Wednesday, May 17, 2017 10:54 PM
To: T.Sariyski <tzsari...@gmail.com>
Cc: CMake ML <cmake@cmake.org>
Subject: Re: [CMake] CTest question
We lack information on how your test are failing. If they all timeout then may
be you should setup a proper timeout for the test. The actual execution speed
of a test may depend on the load of your machine or the network (depending on
what the test are actually doing).
This may be even more sensible if your test are run in parallel. Do you run
ctest with --parallel option?
Do your tests depends on each other? If so did you setup test dependencies?
Le 17 mai 2017 10:59 PM, "T.Sariyski" <tzsari...@gmail.com
<mailto:tzsari...@gmail.com> > a écrit :
Hi,
I wonder what is the reason that sometimes ctest ends with numerous ‘Failed’
and ‘Timeout’, which ‘ctest –rerun-failed’ reports ‘Passed’. At times the
number of these false failures is about one third. I guess that the problem is
in the way I set my tests, but I have no clue where to look, or how to ‘debug’
the ctest run.
Any advice is highly appreciated.
Thanks,
Ted
--
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--
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Kitware offers various services to support the CMake community. For more
information on each offering, please visit:
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Visit other Kitware open-source projects at
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[CMake] CTest question
Hi, I wonder what is the reason that sometimes ctest ends with numerous ‘Failed’ and ‘Timeout’, which ‘ctest –rerun-failed’ reports ‘Passed’. At times the number of these false failures is about one third. I guess that the problem is in the way I set my tests, but I have no clue where to look, or how to ‘debug’ the ctest run. Any advice is highly appreciated. Thanks, Ted -- Powered by www.kitware.com Please keep messages on-topic and check the CMake FAQ at: http://www.cmake.org/Wiki/CMake_FAQ Kitware offers various services to support the CMake community. For more information on each offering, please visit: CMake Support: http://cmake.org/cmake/help/support.html CMake Consulting: http://cmake.org/cmake/help/consulting.html CMake Training Courses: http://cmake.org/cmake/help/training.html Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/cmake
[CMake] compiler flags passed to cmake appear doubled at build time
Hi, For some reason, compiler flags passed to cmake, appear twice at build time. I have a message line at the bottom of the cmakelist file, and it reports the compilers flag as expected. cmake \ -G "Eclipse CDT4 - Unix Makefiles" \ -D MPI=ON \ -D CMAKE_Fortran_FLAGS="-132 -cpp -g -O0 -DIFORT" \ .. -- CMAKE_Fortran_FLAGS= -DMPI -132 -cpp -g -O0 -DIFORT At build time, these flags are doubled: make [ 0%] Building Fortran object src/modules/CMakeFiles/modules.dir/constants.F90.o cd /users/tesari/my/build.intel/src/modules && /opt/mpi/RH6/intel_PS_XE_2013/openmpi-1.6/bin/mpif90 -DMPI -132 -cpp -g -O0 -DIFORT -132 -cpp -g -O0 -DIFORT . This is not a critical error, I am just curious what I am doing wrong. Thanks in advance, Ted -- Powered by www.kitware.com Please keep messages on-topic and check the CMake FAQ at: http://www.cmake.org/Wiki/CMake_FAQ Kitware offers various services to support the CMake community. For more information on each offering, please visit: CMake Support: http://cmake.org/cmake/help/support.html CMake Consulting: http://cmake.org/cmake/help/consulting.html CMake Training Courses: http://cmake.org/cmake/help/training.html Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/cmake
