commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2024-04-21 20:26:43
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.26366 (New)
Package is "python-zarr"
Sun Apr 21 20:26:43 2024 rev:13 rq:1169325 version:2.17.2
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2024-03-19
17:31:15.081469728 +0100
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.26366/python-zarr.changes
2024-04-21 20:27:53.959282464 +0200
@@ -1,0 +2,16 @@
+Sat Apr 20 08:12:17 UTC 2024 - Dirk Müller
+
+- update to 2.17.2:
+ * [v3] Dramatically reduce number of __contains__ requests in
+favor of optimistically calling __getitem__ and handling any
+error that may arise.
+ * [v3] Reuse the downloaded array metadata when creating an
+Array.
+ * Optimize Array.info so that it calls getsize only once.
+ * Override IPython _repr_*_ methods to avoid expensive lookups
+against object stores.
+ * FSStore now raises rather than return bad data.
+ * Add CI test environment for Python 3.12
+ * Bump minimum supported NumPy version to 1.23 (per spec )
+
+---
Old:
zarr-2.17.1.tar.gz
New:
zarr-2.17.2.tar.gz
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.oy2GIu/_old 2024-04-21 20:27:54.751311526 +0200
+++ /var/tmp/diff_new_pack.oy2GIu/_new 2024-04-21 20:27:54.751311526 +0200
@@ -18,7 +18,7 @@
%{?sle15_python_module_pythons}
Name: python-zarr
-Version:2.17.1
+Version:2.17.2
Release:0
Summary:An implementation of chunked, compressed, N-dimensional arrays
for Python
License:MIT
@@ -37,7 +37,7 @@
Requires: python-asciitree
Requires: python-fasteners
Requires: python-numcodecs >= 0.10.0
-Requires: python-numpy >= 1.21.1
+Requires: python-numpy >= 1.23
Suggests: python-dbm
Suggests: python-ipytree
Suggests: python-msgpack
@@ -49,7 +49,7 @@
BuildRequires: %{python_module fasteners}
BuildRequires: %{python_module msgpack}
BuildRequires: %{python_module numcodecs >= 0.10.0}
-BuildRequires: %{python_module numpy >= 1.21.1}
+BuildRequires: %{python_module numpy >= 1.23}
BuildRequires: %{python_module pytest}
# /SECTION
%python_subpackages
++ zarr-2.17.1.tar.gz -> zarr-2.17.2.tar.gz ++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.17.1/.github/workflows/minimal.yml
new/zarr-2.17.2/.github/workflows/minimal.yml
--- old/zarr-2.17.1/.github/workflows/minimal.yml 2024-03-06
20:26:17.0 +0100
+++ new/zarr-2.17.2/.github/workflows/minimal.yml 2024-04-05
22:55:46.0 +0200
@@ -15,7 +15,7 @@
steps:
- uses: actions/checkout@v4
- name: Setup Miniconda
- uses: conda-incubator/setup-miniconda@v3.0.2
+ uses: conda-incubator/setup-miniconda@v3.0.3
with:
channels: conda-forge
environment-file: environment.yml
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.17.1/.github/workflows/python-package.yml
new/zarr-2.17.2/.github/workflows/python-package.yml
--- old/zarr-2.17.1/.github/workflows/python-package.yml2024-03-06
20:26:17.0 +0100
+++ new/zarr-2.17.2/.github/workflows/python-package.yml2024-04-05
22:55:46.0 +0200
@@ -15,13 +15,15 @@
runs-on: ubuntu-latest
strategy:
matrix:
-python-version: ['3.9', '3.10', '3.11']
-numpy_version: ['>=1.22.0', '==1.21.*']
+python-version: ['3.9', '3.10', '3.11', '3.12']
+numpy_version: ['>=1.24.0', '==1.23.*']
exclude:
- python-version: '3.10'
-numpy_version: '==1.21.*'
+numpy_version: '==1.23.*'
- python-version: '3.11'
-numpy_version: '==1.21.*'
+numpy_version: '==1.23.*'
+ - python-version: '3.12'
+numpy_version: '==1.23.*'
services:
redis:
image: redis
@@ -42,7 +44,7 @@
with:
fetch-depth: 0
- name: Setup Miniconda
- uses: conda-incubator/setup-miniconda@v3.0.2
+ uses: conda-incubator/setup-miniconda@v3.0.3
with:
channels: conda-forge
python-version: ${{ matrix.python-version }}
@@ -62,7 +64,7 @@
python -m pip install --upgrade pip
python -m pip install -U pip setuptools wheel line_profiler
python -m pip install -rrequirements_dev_minimal.txt
numpy${{matrix.numpy_version}}
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2024-01-19 23:02:53
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.16006 (New)
Package is "python-zarr"
Fri Jan 19 23:02:53 2024 rev:11 rq:1139963 version:2.16.1
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2023-12-28
23:04:20.620758480 +0100
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.16006/python-zarr.changes
2024-01-19 23:03:00.163799015 +0100
@@ -1,0 +2,6 @@
+Fri Jan 19 14:52:05 UTC 2024 - Daniel Garcia
+
+- skip broken tests in s390x, gh#zarr-developers/zarr-python#1375
+ bsc#1218611
+
+---
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.sQJ22o/_old 2024-01-19 23:03:00.883825353 +0100
+++ /var/tmp/diff_new_pack.sQJ22o/_new 2024-01-19 23:03:00.883825353 +0100
@@ -1,7 +1,7 @@
#
# spec file for package python-zarr
#
-# Copyright (c) 2023 SUSE LLC
+# Copyright (c) 2024 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -72,7 +72,20 @@
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
+# avoid broken tests in s390x, gh#zarr-developers/zarr-python#1375
+%if "%_arch" == "s390x"
+donttest="test_hexdigest or test_nbytes_stored"
+donttest+=" or test_array_1d or test_array_1d_fill_value or
test_array_1d_selections"
+donttest+=" or test_array_2d or test_array_2d_edge_case or test_array_order"
+donttest+=" or test_resize_2d or test_append_2d or test_append_2d_axis"
+donttest+=" or test_np_ufuncs or test_iter or test_islice or test_non_cont"
+donttest+=" or test_read_nitems_less_than_blocksize_from_multiple_chunks"
+donttest+=" or test_read_from_all_blocks"
+donttest+=" or test_format_compatibility"
+%pytest -k "not ($donttest)"
+%else
%pytest
+%endif
%files %{python_files}
%doc README.md
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2023-12-28 23:02:36
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.28375 (New)
Package is "python-zarr"
Thu Dec 28 23:02:36 2023 rev:10 rq:1135342 version:2.16.1
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2023-08-02
16:51:16.737802016 +0200
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.28375/python-zarr.changes
2023-12-28 23:04:20.620758480 +0100
@@ -1,0 +2,8 @@
+Wed Dec 27 16:02:56 UTC 2023 - Dirk Müller
+
+- update to 2.16.1:
+ * Require ``setuptools_scm`` version ``1.5.4``\+
+ * Add ``docs`` requirements to ``pyproject.toml``
+ * Fixed caching issue in ``LRUStoreCache``.
+
+---
Old:
zarr-2.16.0.tar.gz
New:
zarr-2.16.1.tar.gz
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.uR5mqH/_old 2023-12-28 23:04:21.428788012 +0100
+++ /var/tmp/diff_new_pack.uR5mqH/_new 2023-12-28 23:04:21.432788157 +0100
@@ -18,7 +18,7 @@
%{?sle15_python_module_pythons}
Name: python-zarr
-Version:2.16.0
+Version:2.16.1
Release:0
Summary:An implementation of chunked, compressed, N-dimensional arrays
for Python
License:MIT
++ zarr-2.16.0.tar.gz -> zarr-2.16.1.tar.gz ++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.16.0/.git-blame-ignore-revs
new/zarr-2.16.1/.git-blame-ignore-revs
--- old/zarr-2.16.0/.git-blame-ignore-revs 2023-07-20 18:35:10.0
+0200
+++ new/zarr-2.16.1/.git-blame-ignore-revs 2023-08-18 16:28:45.0
+0200
@@ -1,2 +1,2 @@
# lint codebase with black and ruff
-4e348d6b80c96da461fd866576c971b8a659ba15
\ No newline at end of file
+4e348d6b80c96da461fd866576c971b8a659ba15
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.16.0/.github/workflows/releases.yml
new/zarr-2.16.1/.github/workflows/releases.yml
--- old/zarr-2.16.0/.github/workflows/releases.yml 2023-07-20
18:35:10.0 +0200
+++ new/zarr-2.16.1/.github/workflows/releases.yml 2023-08-18
16:28:45.0 +0200
@@ -64,7 +64,7 @@
with:
name: releases
path: dist
- - uses: pypa/gh-action-pypi-publish@v1.8.7
+ - uses: pypa/gh-action-pypi-publish@v1.8.10
with:
user: __token__
password: ${{ secrets.pypi_password }}
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.16.0/.pyup.yml new/zarr-2.16.1/.pyup.yml
--- old/zarr-2.16.0/.pyup.yml 2023-07-20 18:35:10.0 +0200
+++ new/zarr-2.16.1/.pyup.yml 2023-08-18 16:28:45.0 +0200
@@ -13,6 +13,3 @@
- requirements_dev_optional.txt:
pin: True
update: all
- - requirements_rtfd.txt:
- pin: False
- update: False
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.16.0/.readthedocs.yaml
new/zarr-2.16.1/.readthedocs.yaml
--- old/zarr-2.16.0/.readthedocs.yaml 2023-07-20 18:35:10.0 +0200
+++ new/zarr-2.16.1/.readthedocs.yaml 2023-08-18 16:28:45.0 +0200
@@ -10,6 +10,7 @@
python:
install:
-- requirements: requirements_rtfd.txt
- method: pip
path: .
+ extra_requirements:
+- docs
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.16.0/PKG-INFO new/zarr-2.16.1/PKG-INFO
--- old/zarr-2.16.0/PKG-INFO2023-07-20 18:35:26.758131500 +0200
+++ new/zarr-2.16.1/PKG-INFO2023-08-18 16:29:04.402384500 +0200
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: zarr
-Version: 2.16.0
+Version: 2.16.1
Summary: An implementation of chunked, compressed, N-dimensional arrays for
Python
Maintainer-email: Alistair Miles
License: MIT
@@ -25,6 +25,7 @@
Requires-Python: >=3.8
Description-Content-Type: text/markdown
Provides-Extra: jupyter
+Provides-Extra: docs
License-File: LICENSE.txt
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.16.0/docs/_static/custom.css
new/zarr-2.16.1/docs/_static/custom.css
--- old/zarr-2.16.0/docs/_static/custom.css 2023-07-20 18:35:10.0
+0200
+++ new/zarr-2.16.1/docs/_static/custom.css 2023-08-18 16:28:45.0
+0200
@@ -120,4 +120,4 @@
html[data-theme=dark] h3 {
color: #0a6774;
-}
\ No newline at end of file
+}
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore'
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2023-08-02 16:49:39
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.22712 (New)
Package is "python-zarr"
Wed Aug 2 16:49:39 2023 rev:9 rq:1101762 version:2.16.0
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2023-07-27
16:53:22.274683044 +0200
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.22712/python-zarr.changes
2023-08-02 16:51:16.737802016 +0200
@@ -1,0 +2,19 @@
+Tue Aug 1 13:24:34 UTC 2023 - Markéta Machová
+
+- update to version 2.16
+ * Migrate to pyproject.toml and remove redundant infrastructure.
+ * Require setuptools 64.0.0+
+ * Bump to NumPy 1.20+ in environment.yml.
+ * More maintenance changes, special thanks to Outreachy participants
+for contributing to most of the maintenance PRs.
+ * Improve Zarr V3 support, adding partial store read/write and
+storage transformers.
+ * N5 nows supports Blosc. Remove warnings emitted when using N5Store
+or N5FSStore with a blosc-compressed array.
+ * Implement more extensive fallback of getitem/setitem for
+orthogonal indexing.
+ * Getitems supports meta_array.
+ * Allow for partial codec specification in V3 array metadata.
+ * Implemented blockwise (chunk blocks) indexing to zarr.Array.
+
+---
Old:
zarr-2.13.3.tar.gz
New:
zarr-2.16.0.tar.gz
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.dHOUpb/_old 2023-08-02 16:51:17.481806510 +0200
+++ /var/tmp/diff_new_pack.dHOUpb/_new 2023-08-02 16:51:17.489806559 +0200
@@ -18,23 +18,25 @@
%{?sle15_python_module_pythons}
Name: python-zarr
-Version:2.13.3
+Version:2.16.0
Release:0
Summary:An implementation of chunked, compressed, N-dimensional arrays
for Python
License:MIT
URL:https://github.com/zarr-developers/zarr-python
Source:
https://files.pythonhosted.org/packages/source/z/zarr/zarr-%{version}.tar.gz
-BuildRequires: %{python_module setuptools >= 38.6.0}
+BuildRequires: %{python_module pip}
+BuildRequires: %{python_module setuptools >= 64.0.0}
BuildRequires: %{python_module setuptools_scm > 1.5.4}
+BuildRequires: %{python_module wheel}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
# Needs full python stdlib, base is not enough
Requires: python >= 3.8
Requires: python-asciitree
-Requires: python-dbm
Requires: python-fasteners
Requires: python-numcodecs >= 0.6.4
-Requires: python-numpy >= 1.7
+Requires: python-numpy >= 1.20
+Suggests: python-dbm
Suggests: python-fsspec >= 0.8.4
Suggests: python-ipytree
Suggests: python-msgpack
@@ -47,7 +49,7 @@
BuildRequires: %{python_module fsspec >= 0.8.4}
BuildRequires: %{python_module msgpack}
BuildRequires: %{python_module numcodecs >= 0.6.4}
-BuildRequires: %{python_module numpy >= 1.7}
+BuildRequires: %{python_module numpy >= 1.20}
BuildRequires: %{python_module pytest}
# Needs full python stdlib, base is not enough
BuildRequires: %{pythons} >= 3.8
@@ -62,11 +64,11 @@
%build
export SETUPTOOLS_SCM_PRETEND_VERSION=%{version}
-%python_build
+%pyproject_wheel
%install
export SETUPTOOLS_SCM_PRETEND_VERSION=%{version}
-%python_install
+%pyproject_install
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
@@ -74,7 +76,7 @@
%files %{python_files}
%doc README.md
-%license LICENSE
+%license LICENSE.txt
%{python_sitelib}/zarr
%{python_sitelib}/zarr-%{version}*-info
++ zarr-2.13.3.tar.gz -> zarr-2.16.0.tar.gz ++
26229 lines of diff (skipped)
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2023-07-27 16:53:08
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.32662 (New)
Package is "python-zarr"
Thu Jul 27 16:53:08 2023 rev:8 rq:1101037 version:2.13.3
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2023-02-14
16:48:01.243363151 +0100
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.32662/python-zarr.changes
2023-07-27 16:53:22.274683044 +0200
@@ -1,0 +2,5 @@
+Thu Jul 27 09:47:45 UTC 2023 - Dirk Müller
+
+- set python311 context for SLE15
+
+---
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.XcFeTN/_old 2023-07-27 16:53:23.066687519 +0200
+++ /var/tmp/diff_new_pack.XcFeTN/_new 2023-07-27 16:53:23.070687542 +0200
@@ -1,7 +1,7 @@
#
# spec file for package python-zarr
#
-# Copyright (c) 2022 SUSE LLC
+# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -16,7 +16,7 @@
#
-%{?!python_module:%define python_module() python3-%{**}}
+%{?sle15_python_module_pythons}
Name: python-zarr
Version:2.13.3
Release:0
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2023-02-14 16:47:22
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.27156 (New)
Package is "python-zarr"
Tue Feb 14 16:47:22 2023 rev:7 rq:1065616 version:2.13.3
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2022-09-12
19:08:26.126567905 +0200
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.27156/python-zarr.changes
2023-02-14 16:48:01.243363151 +0100
@@ -1,0 +2,71 @@
+Sun Oct 9 19:15:50 UTC 2022 - Arun Persaud
+
+- update to version 2.13.3:
+ * Improve performance of slice selections with steps by omitting
+chunks with no relevant data. By Richard Shaw #843.
+
+---
+Wed Sep 28 13:11:03 UTC 2022 - Arun Persaud
+
+- update to version 2.13.2:
+ * Fix test failure on conda-forge builds (again). By :user:`Josh
+Moore `; see zarr-feedstock#65.
+
+---
+Tue Sep 27 17:21:04 UTC 2022 - Arun Persaud
+
+- update to version 2.13.1:
+ * Fix test failure on conda-forge builds. By Josh Moore; see
+zarr-feedstock#65.
+
+---
+Sun Sep 25 20:17:30 UTC 2022 - Arun Persaud
+
+- specfile:
+ * requrie python >= 3.8
+
+- update to version 2.13.0:
+ * Major changes
++ Support of alternative array classes by introducing a new
+ argument, meta_array, that specifies the type/class of the
+ underlying array. The meta_array argument can be any class
+ instance that can be used as the like argument in NumPy (see NEP
+ 35). enabling support for CuPy through, for example, the
+ creation of a CuPy CPU compressor. By Mads R. B. Kristensen
+ #934.
++ Remove support for Python 3.7 in concert with NumPy
+ dependency. By Davis Bennett #1067.
++ Zarr v3: add support for the default root path rather than
+ requiring that all API users pass an explicit path. By Gregory
+ R. Lee #1085, #1142.
+ * Bug fixes
++ Remove/relax erroneous âmetaâ path check (regression). By
+ Gregory R. Lee #1123.
++ Cast all attribute keys to strings (and issue deprecation
+ warning). By Mattia Almansi #1066.
++ Fix bug in N5 storage that prevented arrays located in the root
+ of the hierarchy from bearing the n5 keyword. Along with fixing
+ this bug, new tests were added for N5 routines that had
+ previously been excluded from testing, and type annotations were
+ added to the N5 codebase. By Davis Bennett #1092.
++ Fix bug in LRUEStoreCache in which the current size wasnât reset
+ on invalidation. By BGCMHou and Josh Moore #1076, #1077.
++ Remove erroneous check that disallowed array keys starting with
+ âmetaâ. By Gregory R. Lee #1105.
+ * Documentation
++ Typo fixes to close quotes. By Pavithra Eswaramoorthy
++ Added copy button to documentation. By Altay Sansal #1124.
+ * Maintenance
++ Simplify release docs. By Josh Moore #1119.
++ Pin werkzeug to prevent test hangs. By Davis Bennett #1098.
++ Fix a few DeepSource.io alerts By Dimitri Papadopoulos Orfanos
+ #1080.
++ Fix URLs. By Dimitri Papadopoulos Orfanos, #1074.
++ Fix spelling. By Dimitri Papadopoulos Orfanos, #1073.
++ Update GitHub issue templates with YAML format. By Saransh
+ Chopra #1079.
++ Remove option to return None from _ensure_store. By Greggory Lee
+ #1068.
++ Fix a typo of âintegersâ. By Richard Scott #1056.
+
+---
Old:
zarr-2.12.0.tar.gz
New:
zarr-2.13.3.tar.gz
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.Z3F9IF/_old 2023-02-14 16:48:01.983367520 +0100
+++ /var/tmp/diff_new_pack.Z3F9IF/_new 2023-02-14 16:48:01.987367544 +0100
@@ -17,10 +17,8 @@
%{?!python_module:%define python_module() python3-%{**}}
-%define skip_python2 1
-%define skip_python36 1
Name: python-zarr
-Version:2.12.0
+Version:2.13.3
Release:0
Summary:An implementation of chunked, compressed, N-dimensional arrays
for Python
License:MIT
@@ -31,7 +29,7 @@
BuildRequires: fdupes
BuildRequires: python-rpm-macros
# Needs full python stdlib, base is not enough
-Requires: python >= 3.7
+Requires: python >= 3.8
Requires: python-asciitree
Requires: python-dbm
Requires: python-fasteners
@@ -52,7 +50,7 @@
BuildRequires: %{python_module numpy >= 1.7}
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc Hello community, here is the log from the commit of package python-zarr for openSUSE:Factory checked in at 2022-09-12 19:08:25 Comparing /work/SRC/openSUSE:Factory/python-zarr (Old) and /work/SRC/openSUSE:Factory/.python-zarr.new.2083 (New) Package is "python-zarr" Mon Sep 12 19:08:25 2022 rev:6 rq:1002709 version:2.12.0 Changes: --- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2021-09-01 21:37:38.676910368 +0200 +++ /work/SRC/openSUSE:Factory/.python-zarr.new.2083/python-zarr.changes 2022-09-12 19:08:26.126567905 +0200 @@ -1,0 +2,153 @@ +Sun Aug 21 15:21:17 UTC 2022 - Arun Persaud + +- specfile: + * update copyright year + +- update to version 2.12.0: + * Enhancements ++ Add support for reading and writing Zarr V3. The new + zarr._store.v3 package has the necessary classes and functions + for evaluating Zarr V3. Since the format is not yet finalized, + the classes and functions are not automatically imported into + the regular zarr name space. Setting the + ZARR_V3_EXPERIMENTAL_API environment variable will activate + them. By Greggory Lee; #898, #1006, and #1007 as well as by Josh + Moore #1032. ++ Create FSStore from an existing fsspec filesystem. If you have + created an fsspec filesystem outside of Zarr, you can now pass + it as a keyword argument to FSStore. By Ryan Abernathey; #911. ++ Add numpy encoder class for json.dumps By Eric Prestat; #933. ++ Appending performance improvement to Zarr arrays, e.g., when + writing to S3. By hailiangzhang; #1014. ++ Add number encoder for json.dumps to support numpy intergers in + chunks arguments. By Eric Prestat #697. + * Bug fixes ++ Fix bug that made it impossible to create an FSStore on + unlistable filesystems (e.g. some HTTP servers). By Ryan + Abernathey; #993. + * Documentation ++ Update resize doc to clarify surprising behavior. By + hailiangzhang; #1022. + * Maintenance ++ Added Pre-commit configuration, incl. Yaml Check. By Shivank + Chaudhary; #1015, #1016. ++ Fix URL to renamed file in Blosc repo. By Andrew Thomas #1028. ++ Activate Py 3.10 builds. By Josh Moore #1027. ++ Make all unignored zarr warnings errors. By Josh Moore #1021. + +- changes from version 2.11.3: + * Bug fixes ++ Fix missing case to fully revert change to default + write_empty_chunks. By Tom White; #1005. + +- changes from version 2.11.2: + * Bug fixes ++ Changes the default value of write_empty_chunks to True to + prevent unanticipated data losses when the data types do not + have a proper default value when empty chunks are read back + in. By Vyas Ramasubramani; #965, #1001. + +- changes from version 2.11.1: + * Bug fixes ++ Fix bug where indexing with a scalar numpy value returned a + single-value array. By Ben Jeffery #967. ++ Removed clobber argument from normalize_store_arg. This enables + to change data within a opened consolidated group using mode + ???r+??? (i.e region write). By Tobias K??lling #975. + +- changes from version 2.11.0: + * Enhancements ++ Sparse changes with performance impact! One of the advantages of + the Zarr format is that it is sparse, which means that chunks + with no data (more precisely, with data equal to the fill value, + which is usually 0) don???t need to be written to disk at + all. They will simply be assumed to be empty at read + time. However, until this release, the Zarr library would write + these empty chunks to disk anyway. This changes in this version: + a small performance penalty at write time leads to significant + speedups at read time and in filesystem operations in the case + of sparse arrays. To revert to the old behavior, pass the + argument write_empty_chunks=True to the array creation + function. By Juan Nunez-Iglesias; #853 and Davis Bennett; #738. ++ Fancy indexing. Zarr arrays now support NumPy-style fancy + indexing with arrays of integer coordinates. This is equivalent + to using zarr.Array.vindex. Mixing slices and integer arrays is + not supported. By Juan Nunez-Iglesias; #725. ++ New base class. This release of Zarr Python introduces a new + BaseStore class that all provided store classes implemented in + Zarr Python now inherit from. This is done as part of + refactoring to enable future support of the Zarr version 3 + spec. Existing third-party stores that are a MutableMapping + (e.g. dict) can be converted to a new-style key/value store + inheriting from BaseStore by passing them as the argument to the + new zarr.storage.KVStore class. For backwards compatibility, + various higher-level
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2021-09-01 21:37:16
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.1899 (New)
Package is "python-zarr"
Wed Sep 1 21:37:16 2021 rev:5 rq:915459 version:2.9.5
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2021-08-28
22:29:08.313975984 +0200
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.1899/python-zarr.changes
2021-09-01 21:37:38.676910368 +0200
@@ -1,0 +2,9 @@
+Wed Sep 1 09:34:16 UTC 2021 - Matej Cepl
+
+- Update to 2.9.5:
+ - Fix FSStore.listdir behavior for nested directories (replaces
+now unnecessary skip-825-TestFSStore-test_create.patch).
+ - Fix structured arrays that contain objects (which replaces
+zarr-pr802-fsspec-2021-07.patch).
+
+---
Old:
skip-825-TestFSStore-test_create.patch
zarr-2.9.3.tar.gz
zarr-pr802-fsspec-2021-07.patch
New:
zarr-2.9.5.tar.gz
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.Rw5MzB/_old 2021-09-01 21:37:39.256911066 +0200
+++ /var/tmp/diff_new_pack.Rw5MzB/_new 2021-09-01 21:37:39.260911070 +0200
@@ -20,17 +20,12 @@
%define skip_python2 1
%define skip_python36 1
Name: python-zarr
-Version:2.9.3
+Version:2.9.5
Release:0
Summary:An implementation of chunked, compressed, N-dimensional arrays
for Python
License:MIT
URL:https://github.com/zarr-developers/zarr-python
Source:
https://files.pythonhosted.org/packages/source/z/zarr/zarr-%{version}.tar.gz
-# PATCH-FIX-UPSTREAM zarr-pr802-fsspec-2021-07.patch --
gh#zarr-developers/zarr-python#802 and gh#zarr-developers/zarr-python#812
-Patch0: zarr-pr802-fsspec-2021-07.patch
-# PATCH-FIX-UPSTREAM skip-825-TestFSStore-test_create.patch
gh#zarr-developers/zarr-python#825 mc...@suse.com
-# Skip the failing test
-Patch1: skip-825-TestFSStore-test_create.patch
BuildRequires: %{python_module setuptools >= 38.6.0}
BuildRequires: %{python_module setuptools_scm}
BuildRequires: fdupes
++ zarr-2.9.3.tar.gz -> zarr-2.9.5.tar.gz ++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.9.3/PKG-INFO new/zarr-2.9.5/PKG-INFO
--- old/zarr-2.9.3/PKG-INFO 2021-08-26 11:57:52.194819700 +0200
+++ new/zarr-2.9.5/PKG-INFO 2021-09-01 10:21:28.011391600 +0200
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: zarr
-Version: 2.9.3
+Version: 2.9.5
Summary: An implementation of chunked, compressed, N-dimensional arrays for
Python.
Home-page: https://github.com/zarr-developers/zarr-python
Maintainer: Alistair Miles
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.9.3/docs/release.rst
new/zarr-2.9.5/docs/release.rst
--- old/zarr-2.9.3/docs/release.rst 2021-08-26 11:57:39.0 +0200
+++ new/zarr-2.9.5/docs/release.rst 2021-09-01 10:21:18.0 +0200
@@ -6,6 +6,28 @@
Unreleased
--
+.. _release_2.9.5:
+
+2.9.5
+-
+
+Bug fixes
+~
+
+* Fix FSStore.listdir behavior for nested directories.
+ By :user:`Greggory Lee `; :issue:`802`.
+
+.. _release_2.9.4:
+
+2.9.4
+-
+
+Bug fixes
+~
+
+* Fix structured arrays that contain objects
+ By :user: `Attila Bergou `; :issue: `806`
+
.. _release_2.9.3:
2.9.3
@@ -31,7 +53,6 @@
* Correct conda-forge deployment of Zarr by fixing some Zarr tests.
By :user:`Ben Williams `; :issue:`821`.
-
.. _release_2.9.1:
2.9.1
@@ -92,7 +113,6 @@
* TST: add missing assert in test_hexdigest.
By :user:`Greggory Lee `; :issue:`801`.
-
.. _release_2.8.3:
2.8.3
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.9.3/requirements_dev_minimal.txt
new/zarr-2.9.5/requirements_dev_minimal.txt
--- old/zarr-2.9.3/requirements_dev_minimal.txt 2021-08-26 11:57:40.0
+0200
+++ new/zarr-2.9.5/requirements_dev_minimal.txt 2021-09-01 10:21:18.0
+0200
@@ -5,4 +5,4 @@
msgpack-python==0.5.6
setuptools-scm==6.0.1
# test requirements
-pytest==6.2.4
+pytest==6.2.5
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/zarr-2.9.3/requirements_dev_optional.txt
new/zarr-2.9.5/requirements_dev_optional.txt
--- old/zarr-2.9.3/requirements_dev_optional.txt2021-08-26
11:57:40.0 +0200
+++ new/zarr-2.9.5/requirements_dev_optional.txt2021-09-01
10:21:18.0 +0200
@@ -9,6 +9,7 @@
azure-storage-blob==12.8.1 # pyup: ignore
redis==3.5.3
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2021-08-28 22:28:55
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.1899 (New)
Package is "python-zarr"
Sat Aug 28 22:28:55 2021 rev:4 rq:914748 version:2.9.3
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2021-07-22
22:43:51.571160777 +0200
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.1899/python-zarr.changes
2021-08-28 22:29:08.313975984 +0200
@@ -1,0 +2,29 @@
+Sat Aug 28 08:54:39 UTC 2021 - Matej Cepl
+
+- Update to 2.9.3:
+ - Mark the fact that some tests that require fsspec, without
+compromising the code coverage score. By Ben Williams; #823.
+ - Only inspect alternate node type if desired isn???t
+present. By Trevor Manz; #696.
+ - Correct conda-forge deployment of Zarr by fixing some Zarr
+tests. By Ben Williams; #821.
+- Add skip-825-TestFSStore-test_create.patch
+ (gh#zarr-developers/zarr-python#825).
+
+---
+Mon Aug 23 16:51:52 UTC 2021 - Ben Greiner
+
+- Update to version 2.9.0
+ * This release of Zarr Python is the first release of Zarr to not
+support Python 3.6.
+ * Update ABSStore for compatibility with newer azure.storage.
+blob.
+ * Pathlib support.
+ * Fix dimension_separator support.
+ * Extract ABSStore to zarr._storage.absstore.
+ * TST: add missing assert in test_hexdigest.
+- Add zarr-pr802-fsspec-2021-07.patch
+ * gh#zarr-developers/zarr-python#802
+ * gh#zarr-developers/zarr-python#812
+
+---
Old:
zarr-2.8.3.tar.gz
New:
skip-825-TestFSStore-test_create.patch
zarr-2.9.3.tar.gz
zarr-pr802-fsspec-2021-07.patch
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.9XdObH/_old 2021-08-28 22:29:09.505977221 +0200
+++ /var/tmp/diff_new_pack.9XdObH/_new 2021-08-28 22:29:09.505977221 +0200
@@ -18,21 +18,25 @@
%{?!python_module:%define python_module() python3-%{**}}
%define skip_python2 1
-# Requires numpy: NEP 29, NumPy 1.20 in TW dropped Python 3.6 support
%define skip_python36 1
Name: python-zarr
-Version:2.8.3
+Version:2.9.3
Release:0
Summary:An implementation of chunked, compressed, N-dimensional arrays
for Python
License:MIT
URL:https://github.com/zarr-developers/zarr-python
Source:
https://files.pythonhosted.org/packages/source/z/zarr/zarr-%{version}.tar.gz
+# PATCH-FIX-UPSTREAM zarr-pr802-fsspec-2021-07.patch --
gh#zarr-developers/zarr-python#802 and gh#zarr-developers/zarr-python#812
+Patch0: zarr-pr802-fsspec-2021-07.patch
+# PATCH-FIX-UPSTREAM skip-825-TestFSStore-test_create.patch
gh#zarr-developers/zarr-python#825 mc...@suse.com
+# Skip the failing test
+Patch1: skip-825-TestFSStore-test_create.patch
BuildRequires: %{python_module setuptools >= 38.6.0}
-BuildRequires: %{python_module setuptools_scm > 1.5.4}
+BuildRequires: %{python_module setuptools_scm}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
# Needs full python stdlib, base is not enough
-Requires: python >= 3.5
+Requires: python >= 3.7
Requires: python-asciitree
Requires: python-dbm
Requires: python-fasteners
@@ -45,7 +49,7 @@
BuildArch: noarch
# SECTION test requirements
# Needs full python stdlib, base is not enough
-BuildRequires: %pythons >= 3.5
+BuildRequires: %pythons >= 3.7
BuildRequires: %{python_module asciitree}
BuildRequires: %{python_module dbm}
BuildRequires: %{python_module fasteners}
@@ -61,12 +65,14 @@
An implementation of chunked, compressed, N-dimensional arrays for Python.
%prep
-%setup -q -n zarr-%{version}
+%autosetup -p1 -n zarr-%{version}
%build
+export SETUPTOOLS_SCM_PRETEND_VERSION=%{version}
%python_build
%install
+export SETUPTOOLS_SCM_PRETEND_VERSION=%{version}
%python_install
%python_expand %fdupes %{buildroot}%{$python_sitelib}
++ skip-825-TestFSStore-test_create.patch ++
---
zarr/tests/test_storage.py |1 +
1 file changed, 1 insertion(+)
--- a/zarr/tests/test_storage.py
+++ b/zarr/tests/test_storage.py
@@ -958,6 +958,7 @@ class TestFSStore(StoreTests):
zarr.open_group(path, mode='w', storage_options={"some": "kwargs"})
zarr.open_array("file://" + path, mode='w', shape=(1,), dtype="f8")
+@pytest.mark.skip(reason="test currently fails,
gh#zarr-developers/zarr-python#825")
def test_create(self):
import zarr
path1 = tempfile.mkdtemp()
++
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2021-07-22 22:43:12
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.1899 (New)
Package is "python-zarr"
Thu Jul 22 22:43:12 2021 rev:3 rq:906771 version:2.8.3
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2021-02-19
23:45:08.307355929 +0100
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.1899/python-zarr.changes
2021-07-22 22:43:51.571160777 +0200
@@ -1,0 +2,29 @@
+Fri Jul 16 15:07:21 UTC 2021 - Ben Greiner
+
+- Update to v2.8.3
+ * FSStore: default to normalize_keys=False
+- Release 2.8.2
+ * Add section on rechunking to tutorial
+ * Expand FSStore tests and fix implementation issues
+ * Updated ipytree warning for jlab3
+ * Update Python classifiers (Zarr is stable!)
+- Release 2.8.1
+ * raise an error if create_dataset???s dimension_separator is
+ inconsistent
+- Release 2.8.0
+ * V2 Specification Update
+ * Introduce optional dimension_separator .zarray key for nested
+chunks.
+- Release 2.7.1
+ * Update Array to respect FSStore???s key_separator (#718)
+- Release 2.7.0
+ * Start stop for iterator (islice())
+ * Add capability to partially read and decompress chunks
+ * Make DirectoryStore __setitem__ resilient against antivirus
+file locking
+ * Compare test data???s content generally
+ * Fix dtype usage in zarr/meta.py
+ * Fix FSStore key_seperator usage
+ * Simplify text handling in DB Store
+
+---
Old:
zarr-2.6.1.tar.gz
New:
zarr-2.8.3.tar.gz
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.ufoZ26/_old 2021-07-22 22:43:52.043160162 +0200
+++ /var/tmp/diff_new_pack.ufoZ26/_new 2021-07-22 22:43:52.047160157 +0200
@@ -1,7 +1,7 @@
#
# spec file for package python-zarr
#
-# Copyright (c) 2020 SUSE LLC
+# Copyright (c) 2021 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -16,13 +16,12 @@
#
-%{?!python_module:%define python_module() python-%{**} python3-%{**}}
-%define skip_python2 1
+%{?!python_module:%define python_module() python3-%{**}}
%define skip_python2 1
# Requires numpy: NEP 29, NumPy 1.20 in TW dropped Python 3.6 support
%define skip_python36 1
Name: python-zarr
-Version:2.6.1
+Version:2.8.3
Release:0
Summary:An implementation of chunked, compressed, N-dimensional arrays
for Python
License:MIT
++ zarr-2.6.1.tar.gz -> zarr-2.8.3.tar.gz ++
3979 lines of diff (skipped)
commit python-zarr for openSUSE:Factory
Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-zarr for openSUSE:Factory
checked in at 2021-02-19 23:43:43
Comparing /work/SRC/openSUSE:Factory/python-zarr (Old)
and /work/SRC/openSUSE:Factory/.python-zarr.new.28504 (New)
Package is "python-zarr"
Fri Feb 19 23:43:43 2021 rev:2 rq:873414 version:2.6.1
Changes:
--- /work/SRC/openSUSE:Factory/python-zarr/python-zarr.changes 2020-12-31
10:01:41.335044139 +0100
+++ /work/SRC/openSUSE:Factory/.python-zarr.new.28504/python-zarr.changes
2021-02-19 23:45:08.307355929 +0100
@@ -1,0 +2,6 @@
+Wed Feb 17 21:08:29 UTC 2021 - Ben Greiner
+
+- Requires numpy: NEP 29, NumPy 1.20 in TW dropped Python 3.6
+ support. Skip python36 build.
+
+---
Other differences:
--
++ python-zarr.spec ++
--- /var/tmp/diff_new_pack.clLpo1/_old 2021-02-19 23:45:08.927356538 +0100
+++ /var/tmp/diff_new_pack.clLpo1/_new 2021-02-19 23:45:08.927356538 +0100
@@ -18,6 +18,9 @@
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%define skip_python2 1
+%define skip_python2 1
+# Requires numpy: NEP 29, NumPy 1.20 in TW dropped Python 3.6 support
+%define skip_python36 1
Name: python-zarr
Version:2.6.1
Release:0
