svn commit: r743663 - /commons/proper/fileupload/trunk/xdocs/index.xml
Author: dennisl Date: Thu Feb 12 09:15:36 2009 New Revision: 743663 URL: http://svn.apache.org/viewvc?rev=743663view=rev Log: Fix broken link. Modified: commons/proper/fileupload/trunk/xdocs/index.xml Modified: commons/proper/fileupload/trunk/xdocs/index.xml URL: http://svn.apache.org/viewvc/commons/proper/fileupload/trunk/xdocs/index.xml?rev=743663r1=743662r2=743663view=diff == --- commons/proper/fileupload/trunk/xdocs/index.xml (original) +++ commons/proper/fileupload/trunk/xdocs/index.xml Thu Feb 12 09:15:36 2009 @@ -49,7 +49,7 @@ lia href=streaming.htmlStreaming API/a/li lia href=faq.htmlFrequently Asked Questions/a/li lia href=apidocs/index.htmlJavaDoc API/a/li - lia href=maven-reports.htmlProject Reports/a/li + lia href=project-reports.htmlProject Reports/a/li /ul You can also a href=cvs-usage.htmlbrowse/a the Subversion repository. /p
svn commit: r743676 - /commons/sandbox/compress/trunk/pom.xml
Author: bodewig Date: Thu Feb 12 10:03:44 2009 New Revision: 743676 URL: http://svn.apache.org/viewvc?rev=743676view=rev Log: Explicitly set javac source and target to 1.4, submitted by Christian Grobmeier, SANDBOX-288 Modified: commons/sandbox/compress/trunk/pom.xml Modified: commons/sandbox/compress/trunk/pom.xml URL: http://svn.apache.org/viewvc/commons/sandbox/compress/trunk/pom.xml?rev=743676r1=743675r2=743676view=diff == --- commons/sandbox/compress/trunk/pom.xml (original) +++ commons/sandbox/compress/trunk/pom.xml Thu Feb 12 10:03:44 2009 @@ -85,9 +85,17 @@ /properties build -!-- turn off cobertura until we figure out why it's hanging -- plugins plugin +groupIdorg.apache.maven.plugins/groupId +artifactIdmaven-compiler-plugin/artifactId +configuration + source1.4/source + target1.4/target +/configuration + /plugin + !-- turn off cobertura until we figure out why it's hanging -- + plugin groupIdorg.codehaus.mojo/groupId artifactIdcobertura-maven-plugin/artifactId configuration
svn commit: r743678 - in /commons/sandbox/compress/trunk/src: main/java/org/apache/commons/compress/compressors/bzip2/ test/resources/
Author: bodewig
Date: Thu Feb 12 10:27:10 2009
New Revision: 743678
URL: http://svn.apache.org/viewvc?rev=743678view=rev
Log:
use proper BZip2 signature, SANDBOX-285
Modified:
commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorInputStream.java
commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorOutputStream.java
commons/sandbox/compress/trunk/src/test/resources/bla.txt.bz2
Modified:
commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorInputStream.java
URL:
http://svn.apache.org/viewvc/commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorInputStream.java?rev=743678r1=743677r2=743678view=diff
==
---
commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorInputStream.java
(original)
+++
commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorInputStream.java
Thu Feb 12 10:27:10 2009
@@ -218,12 +218,9 @@
if (in.available() == 0) {
throw new IOException(Empty InputStream);
}
-int magic2 = this.in.read();
-if (magic2 != 'h') {
-throw new IOException(Stream is not BZip2 formatted: expected 'h'
- + as first byte but got ' + (char) magic2
- + ');
-}
+checkMagicChar('B', first);
+checkMagicChar('Z', second);
+checkMagicChar('h', third);
int blockSize = this.in.read();
if ((blockSize '1') || (blockSize '9')) {
@@ -237,6 +234,17 @@
setupBlock();
}
+private void checkMagicChar(char expected, String position)
+throws IOException {
+int magic = this.in.read();
+if (magic != expected) {
+throw new IOException(Stream is not BZip2 formatted: expected '
+ + expected + ' as + position
+ + byte but got ' + (char) magic
+ + ');
+}
+}
+
private void initBlock() throws IOException {
char magic0 = bsGetUByte();
char magic1 = bsGetUByte();
Modified:
commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorOutputStream.java
URL:
http://svn.apache.org/viewvc/commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorOutputStream.java?rev=743678r1=743677r2=743678view=diff
==
---
commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorOutputStream.java
(original)
+++
commons/sandbox/compress/trunk/src/main/java/org/apache/commons/compress/compressors/bzip2/BZip2CompressorOutputStream.java
Thu Feb 12 10:27:10 2009
@@ -405,6 +405,8 @@
bytesOut = 0;
nBlocksRandomised = 0;
+bsPutUChar('B');
+bsPutUChar('Z');
/* Write `magic' bytes h indicating file-format == huffmanised,
followed by a digit indicating blockSize100k.
*/
Modified: commons/sandbox/compress/trunk/src/test/resources/bla.txt.bz2
URL:
http://svn.apache.org/viewvc/commons/sandbox/compress/trunk/src/test/resources/bla.txt.bz2?rev=743678r1=743677r2=743678view=diff
==
Binary files - no diff available.
svn commit: r743688 - in /commons/proper/math/trunk/src: java/org/apache/commons/math/stat/correlation/ site/xdoc/ test/R/ test/org/apache/commons/math/stat/correlation/
Author: psteitz
Date: Thu Feb 12 11:21:54 2009
New Revision: 743688
URL: http://svn.apache.org/viewvc?rev=743688view=rev
Log:
Added correlation package, Covariance class. JIRA: MATH-114
Added:
commons/proper/math/trunk/src/java/org/apache/commons/math/stat/correlation/
commons/proper/math/trunk/src/java/org/apache/commons/math/stat/correlation/Covariance.java
(with props)
commons/proper/math/trunk/src/test/R/covarianceTestCases
commons/proper/math/trunk/src/test/org/apache/commons/math/stat/correlation/
commons/proper/math/trunk/src/test/org/apache/commons/math/stat/correlation/CovarianceTest.java
(with props)
Modified:
commons/proper/math/trunk/src/site/xdoc/changes.xml
commons/proper/math/trunk/src/test/R/testAll
Added:
commons/proper/math/trunk/src/java/org/apache/commons/math/stat/correlation/Covariance.java
URL:
http://svn.apache.org/viewvc/commons/proper/math/trunk/src/java/org/apache/commons/math/stat/correlation/Covariance.java?rev=743688view=auto
==
---
commons/proper/math/trunk/src/java/org/apache/commons/math/stat/correlation/Covariance.java
(added)
+++
commons/proper/math/trunk/src/java/org/apache/commons/math/stat/correlation/Covariance.java
Thu Feb 12 11:21:54 2009
@@ -0,0 +1,205 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the License); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an AS IS BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.math.stat.correlation;
+
+import org.apache.commons.math.MathRuntimeException;
+import org.apache.commons.math.linear.RealMatrix;
+import org.apache.commons.math.linear.DenseRealMatrix;
+import org.apache.commons.math.stat.descriptive.moment.Mean;
+import org.apache.commons.math.stat.descriptive.moment.Variance;
+
+/**
+ * Computes covariances for pairs of arrays or columns of a matrix.
+ *
+ * pThe constructors that take codeRealMatrix/code or
+ * codedouble[][]/code arguments generate correlation matrices. The
+ * columns of the input matrices are assumed to represent variable values./p
+ *
+ * pThe constructor argument codebiasCorrected/code determines whether or
+ * not computed covariances are bias-corrected./p
+ *
+ * pUnbiased covariances are given by the formula/p
+ * codecov(X, Y) = Sigma;[(xsubi/sub - E(X))(ysubi/sub - E(Y))] /
(n - 1)/code
+ * where codeE(x)/code is the mean of codeX/code and codeE(Y)/code
+ * is the mean of the codeY/code values.
+ *
+ * pNon-bias-corrected estimates use coden/code in place of coden -
1/code
+ *
+ * @version $Revision$ $Date$
+ * @since 2.0
+ */
+public class Covariance {
+
+/** covariance matrix */
+private final RealMatrix covarianceMatrix;
+
+public Covariance() {
+super();
+covarianceMatrix = null;
+}
+
+/**
+ * Create a Covariance matrix from a rectangular array
+ * whose columns represent covariates.
+ *
+ * pThe codebiasCorrected/code parameter determines whether or not
+ * covariance estimates are bias-corrected./p
+ *
+ * pThe input array must be rectangular with at least two columns
+ * and two rows./p
+ *
+ * @param data rectangular array with columns representing covariates
+ * @param biasCorrected true means covariances are bias-corrected
+ * @throws IllegalArgumentException if the input data array is not
+ * rectangular with at least two rows and two columns.
+ */
+public Covariance(double[][] data, boolean biasCorrected) {
+this(new DenseRealMatrix(data), biasCorrected);
+}
+
+/**
+ * Create a Covariance matrix from a rectangular array
+ * whose columns represent covariates.
+ *
+ * pThe input array must be rectangular with at least two columns
+ * and two rows/p
+ *
+ * @param data rectangular array with columns representing covariates
+ * @throws IllegalArgumentException if the input data array is not
+ * rectangular with at least two rows and two columns.
+ */
+public Covariance(double[][] data) {
+this(data, true);
+}
+
+/**
+ * Create a covariance matrix from a matrix whose columns
+ * represent covariates.
+ *
+ * pThe codebiasCorrected/code parameter determines whether or not
+
svn commit: r743930 - /commons/sandbox/compress/trunk/pom.xml
Author: niallp Date: Thu Feb 12 23:42:56 2009 New Revision: 743930 URL: http://svn.apache.org/viewvc?rev=743930view=rev Log: SANDBOX-288 Use properties to configure the compiler plugin for Java 1.4 through the commons-parent pom and upgrade to the current sandbox parent pom Modified: commons/sandbox/compress/trunk/pom.xml Modified: commons/sandbox/compress/trunk/pom.xml URL: http://svn.apache.org/viewvc/commons/sandbox/compress/trunk/pom.xml?rev=743930r1=743929r2=743930view=diff == --- commons/sandbox/compress/trunk/pom.xml (original) +++ commons/sandbox/compress/trunk/pom.xml Thu Feb 12 23:42:56 2009 @@ -22,7 +22,7 @@ parent groupIdorg.apache.commons/groupId artifactIdcommons-sandbox-parent/artifactId -version4/version +version7/version /parent artifactIdcommons-compress/artifactId @@ -80,20 +80,14 @@ /distributionManagement properties +maven.compile.source1.4/maven.compile.source +maven.compile.target1.4/maven.compile.target commons.componentidcompress/commons.componentid commons.jira.componentid12311183/commons.jira.componentid /properties build plugins - plugin -groupIdorg.apache.maven.plugins/groupId -artifactIdmaven-compiler-plugin/artifactId -configuration - source1.4/source - target1.4/target -/configuration - /plugin !-- turn off cobertura until we figure out why it's hanging -- plugin groupIdorg.codehaus.mojo/groupId
svn commit: r743933 - /commons/sandbox/xml/trunk/pom.xml
Author: niallp Date: Thu Feb 12 23:43:50 2009 New Revision: 743933 URL: http://svn.apache.org/viewvc?rev=743933view=rev Log: Use properties to configure the compiler plugin for Java 1.5 through the commons-parent pom Modified: commons/sandbox/xml/trunk/pom.xml Modified: commons/sandbox/xml/trunk/pom.xml URL: http://svn.apache.org/viewvc/commons/sandbox/xml/trunk/pom.xml?rev=743933r1=743932r2=743933view=diff == --- commons/sandbox/xml/trunk/pom.xml (original) +++ commons/sandbox/xml/trunk/pom.xml Thu Feb 12 23:43:50 2009 @@ -62,19 +62,14 @@ /distributionManagement properties +maven.compile.source1.5/maven.compile.source +maven.compile.target1.5/maven.compile.target commons.componentidxml/commons.componentid commons.jira.componentid12312652/commons.jira.componentid /properties build plugins - plugin -artifactIdmaven-compiler-plugin/artifactId -configuration - source1.5/source - target1.5/target -/configuration - /plugin /plugins /build
